Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 AC116407.4-201ENST00000623319 1061 ntBASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
TM9SF3Q9HD45 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 NEK4P2-201ENST00000580004 1012 ntBASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
TM9SF3Q9HD45 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 KRT18P48-201ENST00000434763 852 ntBASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 KRT126P-201ENST00000549467 1181 ntBASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 AC125437.2-201ENST00000625180 2167 ntBASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
TM9SF3Q9HD45 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
TM9SF3Q9HD45 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
TM9SF3Q9HD45 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TM9SF3Q9HD45 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
TM9SF3Q9HD45 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.89■□□□□ 0.61
TM9SF3Q9HD45 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC18.89■□□□□ 0.61
TM9SF3Q9HD45 AC112907.2-201ENST00000448639 330 ntBASIC18.89■□□□□ 0.61
TM9SF3Q9HD45 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18.89■□□□□ 0.61
TM9SF3Q9HD45 PTK2-216ENST00000519881 863 ntTSL 3 BASIC18.89■□□□□ 0.61
TM9SF3Q9HD45 VENTXP5-201ENST00000523979 775 ntBASIC18.89■□□□□ 0.61
TM9SF3Q9HD45 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC18.89■□□□□ 0.61
TM9SF3Q9HD45 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC18.89■□□□□ 0.61
TM9SF3Q9HD45 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.89■□□□□ 0.61
TM9SF3Q9HD45 GCSHP2-201ENST00000560971 527 ntBASIC18.89■□□□□ 0.61
TM9SF3Q9HD45 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.89■□□□□ 0.61
TM9SF3Q9HD45 DFFB-212ENST00000625756 649 ntTSL 5 BASIC18.89■□□□□ 0.61
TM9SF3Q9HD45 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
TM9SF3Q9HD45 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC18.89■□□□□ 0.61
TM9SF3Q9HD45 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC18.89■□□□□ 0.61
TM9SF3Q9HD45 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
TM9SF3Q9HD45 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.89■□□□□ 0.61
TM9SF3Q9HD45 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
TM9SF3Q9HD45 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms