Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 AC138932.1-201ENST00000534164 6830 ntBASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
PTCHD1Q96NR3 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
PTCHD1Q96NR3 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.83■□□□□ 0.45
PTCHD1Q96NR3 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
PTCHD1Q96NR3 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.83■□□□□ 0.45
PTCHD1Q96NR3 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
PTCHD1Q96NR3 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
PTCHD1Q96NR3 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
PTCHD1Q96NR3 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
PTCHD1Q96NR3 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
PTCHD1Q96NR3 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
PTCHD1Q96NR3 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.45
PTCHD1Q96NR3 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
PTCHD1Q96NR3 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
PTCHD1Q96NR3 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
PTCHD1Q96NR3 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC17.83■□□□□ 0.44
PTCHD1Q96NR3 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC17.83■□□□□ 0.44
PTCHD1Q96NR3 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
PTCHD1Q96NR3 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC17.83■□□□□ 0.44
PTCHD1Q96NR3 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
PTCHD1Q96NR3 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.83■□□□□ 0.44
PTCHD1Q96NR3 TSPY17P-201ENST00000450329 467 ntBASIC17.83■□□□□ 0.44
PTCHD1Q96NR3 ECEL1P2-202ENST00000465689 757 ntBASIC17.83■□□□□ 0.44
PTCHD1Q96NR3 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PTCHD1Q96NR3 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PTCHD1Q96NR3 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC17.83■□□□□ 0.44
PTCHD1Q96NR3 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
PTCHD1Q96NR3 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PTCHD1Q96NR3 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC17.83■□□□□ 0.44
PTCHD1Q96NR3 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
PTCHD1Q96NR3 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PTCHD1Q96NR3 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.83■□□□□ 0.44
PTCHD1Q96NR3 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PTCHD1Q96NR3 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PTCHD1Q96NR3 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.83■□□□□ 0.44
PTCHD1Q96NR3 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC17.83■□□□□ 0.44
PTCHD1Q96NR3 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 INGX-201ENST00000359239 846 ntBASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 DUT-205ENST00000558813 769 ntTSL 2 BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 IRX1P1-201ENST00000438849 1838 ntBASIC17.82■□□□□ 0.44
PTCHD1Q96NR3 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 FEM1AP3-201ENST00000403722 1741 ntBASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 AL353719.1-201ENST00000566847 864 ntBASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 AL023803.3-201ENST00000615559 522 ntBASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 AC005363.2-201ENST00000618631 242 ntBASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms