Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.26■□□□□ 0.67
CHFRQ96EP1 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CHFRQ96EP1 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CHFRQ96EP1 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.26■□□□□ 0.67
CHFRQ96EP1 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CHFRQ96EP1 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHFRQ96EP1 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHFRQ96EP1 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHFRQ96EP1 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CHFRQ96EP1 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
CHFRQ96EP1 MCCD1P1-208ENST00000445732 328 ntBASIC19.26■□□□□ 0.67
CHFRQ96EP1 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHFRQ96EP1 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC19.26■□□□□ 0.67
CHFRQ96EP1 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC19.26■□□□□ 0.67
CHFRQ96EP1 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CHFRQ96EP1 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.26■□□□□ 0.67
CHFRQ96EP1 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
CHFRQ96EP1 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.26■□□□□ 0.67
CHFRQ96EP1 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CHFRQ96EP1 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
CHFRQ96EP1 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CHFRQ96EP1 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHFRQ96EP1 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHFRQ96EP1 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHFRQ96EP1 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CHFRQ96EP1 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.25■□□□□ 0.67
CHFRQ96EP1 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
CHFRQ96EP1 HLA-F-220ENST00000434407 884 ntBASIC19.25■□□□□ 0.67
CHFRQ96EP1 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC19.25■□□□□ 0.67
CHFRQ96EP1 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC19.25■□□□□ 0.67
CHFRQ96EP1 AL157888.1-201ENST00000631930 593 ntBASIC19.25■□□□□ 0.67
CHFRQ96EP1 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC19.25■□□□□ 0.67
CHFRQ96EP1 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHFRQ96EP1 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CHFRQ96EP1 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHFRQ96EP1 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CHFRQ96EP1 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CHFRQ96EP1 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
CHFRQ96EP1 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.25■□□□□ 0.67
CHFRQ96EP1 AC125437.2-201ENST00000625180 2167 ntBASIC19.25■□□□□ 0.67
CHFRQ96EP1 TREX1-205ENST00000625293 1783 ntBASIC19.24■□□□□ 0.67
CHFRQ96EP1 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHFRQ96EP1 AL162741.1-201ENST00000565563 1558 ntBASIC19.24■□□□□ 0.67
CHFRQ96EP1 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHFRQ96EP1 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHFRQ96EP1 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHFRQ96EP1 TSSC2-201ENST00000450217 709 ntBASIC19.24■□□□□ 0.67
CHFRQ96EP1 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHFRQ96EP1 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC19.24■□□□□ 0.67
CHFRQ96EP1 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.24■□□□□ 0.67
CHFRQ96EP1 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC19.24■□□□□ 0.67
CHFRQ96EP1 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC19.24■□□□□ 0.67
CHFRQ96EP1 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC19.24■□□□□ 0.67
CHFRQ96EP1 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
CHFRQ96EP1 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC19.24■□□□□ 0.67
CHFRQ96EP1 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.24■□□□□ 0.67
CHFRQ96EP1 PNMA8A-203ENST00000602246 572 ntAPPRIS ALT2 TSL 4 BASIC19.24■□□□□ 0.67
CHFRQ96EP1 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
CHFRQ96EP1 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHFRQ96EP1 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC19.24■□□□□ 0.67
CHFRQ96EP1 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
CHFRQ96EP1 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHFRQ96EP1 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CHFRQ96EP1 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHFRQ96EP1 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CHFRQ96EP1 TEX21P-204ENST00000641479 1693 ntBASIC19.24■□□□□ 0.67
CHFRQ96EP1 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHFRQ96EP1 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHFRQ96EP1 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC19.23■□□□□ 0.67
CHFRQ96EP1 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.23■□□□□ 0.67
CHFRQ96EP1 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.23■□□□□ 0.67
CHFRQ96EP1 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHFRQ96EP1 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHFRQ96EP1 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC19.23■□□□□ 0.67
CHFRQ96EP1 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHFRQ96EP1 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.23■□□□□ 0.67
CHFRQ96EP1 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.23■□□□□ 0.67
CHFRQ96EP1 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
CHFRQ96EP1 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHFRQ96EP1 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.23■□□□□ 0.67
CHFRQ96EP1 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHFRQ96EP1 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHFRQ96EP1 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CHFRQ96EP1 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CHFRQ96EP1 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHFRQ96EP1 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
CHFRQ96EP1 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CHFRQ96EP1 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHFRQ96EP1 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CHFRQ96EP1 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHFRQ96EP1 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHFRQ96EP1 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHFRQ96EP1 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CHFRQ96EP1 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.22■□□□□ 0.67
CHFRQ96EP1 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHFRQ96EP1 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CHFRQ96EP1 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CHFRQ96EP1 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CHFRQ96EP1 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.22■□□□□ 0.67
CHFRQ96EP1 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC19.22■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms