Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
SKA3Q8IX90 HCG11-201ENST00000411553 5696 ntBASIC16.75■□□□□ 0.27
SKA3Q8IX90 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC16.75■□□□□ 0.27
SKA3Q8IX90 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
SKA3Q8IX90 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
SKA3Q8IX90 IRX1P1-201ENST00000438849 1838 ntBASIC16.75■□□□□ 0.27
SKA3Q8IX90 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
SKA3Q8IX90 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC16.74■□□□□ 0.27
SKA3Q8IX90 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC16.74■□□□□ 0.27
SKA3Q8IX90 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.74■□□□□ 0.27
SKA3Q8IX90 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SKA3Q8IX90 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SKA3Q8IX90 AL161938.1-201ENST00000569833 2180 ntBASIC16.74■□□□□ 0.27
SKA3Q8IX90 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
SKA3Q8IX90 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SKA3Q8IX90 KRT8P11-201ENST00000409686 1436 ntBASIC16.74■□□□□ 0.27
SKA3Q8IX90 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC16.74■□□□□ 0.27
SKA3Q8IX90 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SKA3Q8IX90 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SKA3Q8IX90 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
SKA3Q8IX90 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SKA3Q8IX90 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC16.74■□□□□ 0.27
SKA3Q8IX90 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC16.74■□□□□ 0.27
SKA3Q8IX90 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC16.74■□□□□ 0.27
SKA3Q8IX90 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC16.74■□□□□ 0.27
SKA3Q8IX90 AP003071.4-201ENST00000562276 1284 ntBASIC16.74■□□□□ 0.27
SKA3Q8IX90 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC16.74■□□□□ 0.27
SKA3Q8IX90 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
SKA3Q8IX90 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC16.74■□□□□ 0.27
SKA3Q8IX90 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC16.74■□□□□ 0.27
SKA3Q8IX90 REXO1L10P-201ENST00000615707 1290 ntBASIC16.74■□□□□ 0.27
SKA3Q8IX90 REXO1L12P-201ENST00000622156 912 ntBASIC16.74■□□□□ 0.27
SKA3Q8IX90 DECR2-212ENST00000627716 352 ntTSL 2 BASIC16.74■□□□□ 0.27
SKA3Q8IX90 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SKA3Q8IX90 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SKA3Q8IX90 GOLGA6L5P-202ENST00000515341 1828 ntBASIC16.74■□□□□ 0.27
SKA3Q8IX90 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
SKA3Q8IX90 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
SKA3Q8IX90 AC004408.2-201ENST00000623613 2777 ntBASIC16.74■□□□□ 0.27
SKA3Q8IX90 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SKA3Q8IX90 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SKA3Q8IX90 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SKA3Q8IX90 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
SKA3Q8IX90 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.74■□□□□ 0.27
SKA3Q8IX90 GAS2L1P1-201ENST00000420145 1480 ntBASIC16.73■□□□□ 0.27
SKA3Q8IX90 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SKA3Q8IX90 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SKA3Q8IX90 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
SKA3Q8IX90 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SKA3Q8IX90 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
SKA3Q8IX90 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC16.73■□□□□ 0.27
SKA3Q8IX90 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
SKA3Q8IX90 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
SKA3Q8IX90 FAM207BP-201ENST00000447172 505 ntBASIC16.73■□□□□ 0.27
SKA3Q8IX90 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC16.73■□□□□ 0.27
SKA3Q8IX90 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC16.73■□□□□ 0.27
SKA3Q8IX90 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC16.73■□□□□ 0.27
SKA3Q8IX90 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC16.73■□□□□ 0.27
SKA3Q8IX90 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC16.73■□□□□ 0.27
SKA3Q8IX90 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC16.73■□□□□ 0.27
SKA3Q8IX90 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
SKA3Q8IX90 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SKA3Q8IX90 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC16.73■□□□□ 0.27
SKA3Q8IX90 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
SKA3Q8IX90 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SKA3Q8IX90 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC16.73■□□□□ 0.27
SKA3Q8IX90 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
SKA3Q8IX90 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
SKA3Q8IX90 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SKA3Q8IX90 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SKA3Q8IX90 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
SKA3Q8IX90 FP475955.4-201ENST00000623131 1990 ntBASIC16.73■□□□□ 0.27
SKA3Q8IX90 FEM1AP3-201ENST00000403722 1741 ntBASIC16.73■□□□□ 0.27
SKA3Q8IX90 UBQLN4P1-201ENST00000461599 1801 ntBASIC16.73■□□□□ 0.27
SKA3Q8IX90 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SKA3Q8IX90 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
SKA3Q8IX90 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SKA3Q8IX90 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
SKA3Q8IX90 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC16.72■□□□□ 0.27
SKA3Q8IX90 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
SKA3Q8IX90 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC16.72■□□□□ 0.27
SKA3Q8IX90 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SKA3Q8IX90 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC16.72■□□□□ 0.27
SKA3Q8IX90 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SKA3Q8IX90 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SKA3Q8IX90 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SKA3Q8IX90 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC16.72■□□□□ 0.27
SKA3Q8IX90 MIR4497-201ENST00000583208 89 ntBASIC16.72■□□□□ 0.27
SKA3Q8IX90 MIR4785-201ENST00000585005 73 ntBASIC16.72■□□□□ 0.27
SKA3Q8IX90 AP000692.2-201ENST00000608391 879 ntBASIC16.72■□□□□ 0.27
SKA3Q8IX90 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
SKA3Q8IX90 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
SKA3Q8IX90 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SKA3Q8IX90 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SKA3Q8IX90 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
SKA3Q8IX90 AL049812.1-201ENST00000432563 2267 ntBASIC16.72■□□□□ 0.27
SKA3Q8IX90 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC16.72■□□□□ 0.27
SKA3Q8IX90 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
SKA3Q8IX90 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC16.72■□□□□ 0.27
SKA3Q8IX90 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms