Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SCUBE3Q8IX30 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.91■□□□□ 0.78
SCUBE3Q8IX30 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
SCUBE3Q8IX30 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.91■□□□□ 0.78
SCUBE3Q8IX30 TBC1D3P2-202ENST00000577902 1649 ntBASIC19.91■□□□□ 0.78
SCUBE3Q8IX30 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SCUBE3Q8IX30 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 USP39-202ENST00000409025 1946 ntTSL 5 BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 AC006333.2-201ENST00000607957 2099 ntBASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 AC087499.1-201ENST00000418141 1075 ntBASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
SCUBE3Q8IX30 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.89■□□□□ 0.78
SCUBE3Q8IX30 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 CA15P1-201ENST00000481698 905 ntBASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 KRT8P3-201ENST00000519669 1449 ntBASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 NAPSB-206ENST00000562112 1266 ntBASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 C2orf69P3-201ENST00000565542 1120 ntBASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 AL023803.3-201ENST00000615559 522 ntBASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 AC008622.2-201ENST00000617006 1229 ntBASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
SCUBE3Q8IX30 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCUBE3Q8IX30 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
SCUBE3Q8IX30 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.88■□□□□ 0.77
SCUBE3Q8IX30 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
SCUBE3Q8IX30 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCUBE3Q8IX30 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC19.88■□□□□ 0.77
SCUBE3Q8IX30 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC19.88■□□□□ 0.77
SCUBE3Q8IX30 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
SCUBE3Q8IX30 INGX-201ENST00000359239 846 ntBASIC19.88■□□□□ 0.77
SCUBE3Q8IX30 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.88■□□□□ 0.77
SCUBE3Q8IX30 SLC25A1P2-201ENST00000430693 912 ntBASIC19.88■□□□□ 0.77
SCUBE3Q8IX30 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SCUBE3Q8IX30 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.88■□□□□ 0.77
SCUBE3Q8IX30 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
SCUBE3Q8IX30 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCUBE3Q8IX30 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC19.88■□□□□ 0.77
SCUBE3Q8IX30 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC19.88■□□□□ 0.77
SCUBE3Q8IX30 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC19.88■□□□□ 0.77
SCUBE3Q8IX30 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SCUBE3Q8IX30 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.88■□□□□ 0.77
SCUBE3Q8IX30 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SCUBE3Q8IX30 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCUBE3Q8IX30 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
SCUBE3Q8IX30 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SCUBE3Q8IX30 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SCUBE3Q8IX30 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SCUBE3Q8IX30 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SCUBE3Q8IX30 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SCUBE3Q8IX30 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
SCUBE3Q8IX30 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SCUBE3Q8IX30 TSPY14P-201ENST00000303979 915 ntBASIC19.87■□□□□ 0.77
SCUBE3Q8IX30 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.87■□□□□ 0.77
SCUBE3Q8IX30 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
SCUBE3Q8IX30 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SCUBE3Q8IX30 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC19.87■□□□□ 0.77
SCUBE3Q8IX30 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
SCUBE3Q8IX30 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.87■□□□□ 0.77
SCUBE3Q8IX30 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.87■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms