Protein–RNA interactions for Protein: P49662

CASP4, Caspase-4, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CASP4P49662 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CASP4P49662 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.65■□□□□ 0.9
CASP4P49662 AC083906.6-201ENST00000641366 219 ntBASIC20.65■□□□□ 0.9
CASP4P49662 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
CASP4P49662 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
CASP4P49662 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
CASP4P49662 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CASP4P49662 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
CASP4P49662 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC20.64■□□□□ 0.9
CASP4P49662 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
CASP4P49662 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CASP4P49662 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.64■□□□□ 0.9
CASP4P49662 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CASP4P49662 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.64■□□□□ 0.89
CASP4P49662 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC20.64■□□□□ 0.89
CASP4P49662 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CASP4P49662 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.89
CASP4P49662 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CASP4P49662 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
CASP4P49662 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
CASP4P49662 AC097488.1-201ENST00000507834 756 ntBASIC20.64■□□□□ 0.89
CASP4P49662 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.64■□□□□ 0.89
CASP4P49662 AP000525.1-201ENST00000608286 694 ntBASIC20.64■□□□□ 0.89
CASP4P49662 DGCR10-201ENST00000609839 495 ntBASIC20.64■□□□□ 0.89
CASP4P49662 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.64■□□□□ 0.89
CASP4P49662 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC20.64■□□□□ 0.89
CASP4P49662 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
CASP4P49662 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.64■□□□□ 0.89
CASP4P49662 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CASP4P49662 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CASP4P49662 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
CASP4P49662 AC093525.10-201ENST00000625130 1569 ntBASIC20.63■□□□□ 0.89
CASP4P49662 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CASP4P49662 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CASP4P49662 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC20.63■□□□□ 0.89
CASP4P49662 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CASP4P49662 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CASP4P49662 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CASP4P49662 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.63■□□□□ 0.89
CASP4P49662 AL390955.1-201ENST00000428694 934 ntBASIC20.63■□□□□ 0.89
CASP4P49662 MFAP1P1-201ENST00000442257 1255 ntBASIC20.63■□□□□ 0.89
CASP4P49662 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
CASP4P49662 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC20.63■□□□□ 0.89
CASP4P49662 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
CASP4P49662 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.63■□□□□ 0.89
CASP4P49662 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CASP4P49662 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CASP4P49662 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CASP4P49662 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CASP4P49662 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
CASP4P49662 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CASP4P49662 KATNBL1P6-202ENST00000562413 1466 ntBASIC20.62■□□□□ 0.89
CASP4P49662 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
CASP4P49662 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CASP4P49662 KRT8P3-201ENST00000519669 1449 ntBASIC20.62■□□□□ 0.89
CASP4P49662 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC20.62■□□□□ 0.89
CASP4P49662 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CASP4P49662 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC20.62■□□□□ 0.89
CASP4P49662 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CASP4P49662 RNF165-205ENST00000588679 2904 ntBASIC20.62■□□□□ 0.89
CASP4P49662 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CASP4P49662 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CASP4P49662 SBNO2-201ENST00000361757 4923 ntAPPRIS P4 TSL 1 (best) BASIC20.62■□□□□ 0.89
CASP4P49662 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CASP4P49662 PRR31-201ENST00000371629 978 ntTSL 2 BASIC20.62■□□□□ 0.89
CASP4P49662 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.62■□□□□ 0.89
CASP4P49662 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.62■□□□□ 0.89
CASP4P49662 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CASP4P49662 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.62■□□□□ 0.89
CASP4P49662 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.62■□□□□ 0.89
CASP4P49662 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CASP4P49662 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.62■□□□□ 0.89
CASP4P49662 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC20.62■□□□□ 0.89
CASP4P49662 TBC1D3P2-202ENST00000577902 1649 ntBASIC20.62■□□□□ 0.89
CASP4P49662 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CASP4P49662 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC20.62■□□□□ 0.89
CASP4P49662 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.62■□□□□ 0.89
CASP4P49662 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CASP4P49662 AL138781.2-201ENST00000617896 1843 ntBASIC20.62■□□□□ 0.89
CASP4P49662 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
CASP4P49662 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CASP4P49662 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CASP4P49662 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CASP4P49662 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CASP4P49662 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CASP4P49662 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CASP4P49662 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CASP4P49662 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
CASP4P49662 CRYGFP-201ENST00000418459 633 ntBASIC20.61■□□□□ 0.89
CASP4P49662 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CASP4P49662 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.61■□□□□ 0.89
CASP4P49662 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.61■□□□□ 0.89
CASP4P49662 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CASP4P49662 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.61■□□□□ 0.89
CASP4P49662 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
CASP4P49662 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC20.61■□□□□ 0.89
CASP4P49662 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
CASP4P49662 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC20.61■□□□□ 0.89
CASP4P49662 USP49-202ENST00000373010 2446 ntTSL 5 BASIC20.61■□□□□ 0.89
CASP4P49662 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 36.1 ms