Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC31.73■■■□□ 2.67
CUX1P39880 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC31.73■■■□□ 2.67
CUX1P39880 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC31.73■■■□□ 2.67
CUX1P39880 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC31.73■■■□□ 2.67
CUX1P39880 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC31.73■■■□□ 2.67
CUX1P39880 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC31.73■■■□□ 2.67
CUX1P39880 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
CUX1P39880 CDV3-207ENST00000508481 661 ntTSL 3 BASIC31.73■■■□□ 2.67
CUX1P39880 AC005332.3-201ENST00000589904 676 ntBASIC31.73■■■□□ 2.67
CUX1P39880 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC31.73■■■□□ 2.67
CUX1P39880 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC31.73■■■□□ 2.67
CUX1P39880 REXO1L6P-202ENST00000619970 1078 ntBASIC31.73■■■□□ 2.67
CUX1P39880 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
CUX1P39880 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC31.73■■■□□ 2.67
CUX1P39880 AL512353.2-201ENST00000448759 1962 ntBASIC31.73■■■□□ 2.67
CUX1P39880 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC31.72■■■□□ 2.67
CUX1P39880 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC31.72■■■□□ 2.67
CUX1P39880 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
CUX1P39880 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC31.72■■■□□ 2.67
CUX1P39880 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC31.72■■■□□ 2.67
CUX1P39880 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
CUX1P39880 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
CUX1P39880 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
CUX1P39880 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC31.72■■■□□ 2.67
CUX1P39880 AL662844.1-201ENST00000546340 181 ntBASIC31.72■■■□□ 2.67
CUX1P39880 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
CUX1P39880 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC31.72■■■□□ 2.67
CUX1P39880 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
CUX1P39880 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC31.71■■■□□ 2.67
CUX1P39880 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC31.71■■■□□ 2.67
CUX1P39880 KRT8P7-201ENST00000533003 1432 ntBASIC31.71■■■□□ 2.67
CUX1P39880 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
CUX1P39880 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC31.71■■■□□ 2.67
CUX1P39880 LBX2-AS1-202ENST00000603175 2083 ntBASIC31.71■■■□□ 2.67
CUX1P39880 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
CUX1P39880 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC31.71■■■□□ 2.67
CUX1P39880 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
CUX1P39880 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
CUX1P39880 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
CUX1P39880 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC31.7■■■□□ 2.67
CUX1P39880 SAPCD2P3-201ENST00000455031 850 ntBASIC31.7■■■□□ 2.67
CUX1P39880 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC31.7■■■□□ 2.67
CUX1P39880 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC31.7■■■□□ 2.67
CUX1P39880 AC090616.6-201ENST00000582640 721 ntBASIC31.7■■■□□ 2.67
CUX1P39880 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC31.7■■■□□ 2.67
CUX1P39880 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC31.7■■■□□ 2.67
CUX1P39880 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
CUX1P39880 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
CUX1P39880 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
CUX1P39880 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
CUX1P39880 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC31.7■■■□□ 2.66
CUX1P39880 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
CUX1P39880 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC31.7■■■□□ 2.66
CUX1P39880 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC31.7■■■□□ 2.66
CUX1P39880 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC31.7■■■□□ 2.66
CUX1P39880 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC31.7■■■□□ 2.66
CUX1P39880 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC31.7■■■□□ 2.66
CUX1P39880 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC31.7■■■□□ 2.66
CUX1P39880 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC31.7■■■□□ 2.66
CUX1P39880 IGHV3OR16-7-201ENST00000604106 360 ntBASIC31.7■■■□□ 2.66
CUX1P39880 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC31.69■■■□□ 2.66
CUX1P39880 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC31.69■■■□□ 2.66
CUX1P39880 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC31.69■■■□□ 2.66
CUX1P39880 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC31.69■■■□□ 2.66
CUX1P39880 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
CUX1P39880 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
CUX1P39880 IGHGP-201ENST00000390555 1178 ntBASIC31.69■■■□□ 2.66
CUX1P39880 AP003733.1-201ENST00000491725 852 ntBASIC31.69■■■□□ 2.66
CUX1P39880 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
CUX1P39880 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
CUX1P39880 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
CUX1P39880 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC31.68■■■□□ 2.66
CUX1P39880 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
CUX1P39880 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC31.68■■■□□ 2.66
CUX1P39880 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC31.68■■■□□ 2.66
CUX1P39880 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
CUX1P39880 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC31.68■■■□□ 2.66
CUX1P39880 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC31.68■■■□□ 2.66
CUX1P39880 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC31.67■■■□□ 2.66
CUX1P39880 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC31.67■■■□□ 2.66
CUX1P39880 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
CUX1P39880 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC31.67■■■□□ 2.66
CUX1P39880 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
CUX1P39880 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC31.67■■■□□ 2.66
CUX1P39880 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC31.67■■■□□ 2.66
CUX1P39880 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC31.67■■■□□ 2.66
CUX1P39880 FICD-205ENST00000552758 603 ntTSL 2 BASIC31.67■■■□□ 2.66
CUX1P39880 NAT14-202ENST00000587400 416 ntTSL 5 BASIC31.67■■■□□ 2.66
CUX1P39880 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
CUX1P39880 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
CUX1P39880 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
CUX1P39880 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
CUX1P39880 PPIE-208ENST00000470213 927 ntTSL 3 BASIC31.66■■■□□ 2.66
CUX1P39880 RN7SL606P-201ENST00000472779 293 ntBASIC31.66■■■□□ 2.66
CUX1P39880 PENK-208ENST00000523051 772 ntTSL 5 BASIC31.66■■■□□ 2.66
CUX1P39880 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
CUX1P39880 PBK-203ENST00000522944 1499 ntTSL 2 BASIC31.66■■■□□ 2.66
CUX1P39880 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC31.66■■■□□ 2.66
CUX1P39880 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC31.66■■■□□ 2.66
CUX1P39880 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms