Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
BRCA1P38398 AC098831.1-202ENST00000438821 336 ntBASIC23.07■■□□□ 1.28
BRCA1P38398 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC23.07■■□□□ 1.28
BRCA1P38398 PPOX-214ENST00000535223 664 ntTSL 3 BASIC23.07■■□□□ 1.28
BRCA1P38398 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
BRCA1P38398 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
BRCA1P38398 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
BRCA1P38398 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
BRCA1P38398 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
BRCA1P38398 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
BRCA1P38398 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
BRCA1P38398 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
BRCA1P38398 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC23.07■■□□□ 1.28
BRCA1P38398 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC23.07■■□□□ 1.28
BRCA1P38398 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
BRCA1P38398 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
BRCA1P38398 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
BRCA1P38398 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC23.07■■□□□ 1.28
BRCA1P38398 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC23.07■■□□□ 1.28
BRCA1P38398 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC23.07■■□□□ 1.28
BRCA1P38398 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
BRCA1P38398 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC23.06■■□□□ 1.28
BRCA1P38398 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC23.06■■□□□ 1.28
BRCA1P38398 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
BRCA1P38398 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
BRCA1P38398 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
BRCA1P38398 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
BRCA1P38398 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
BRCA1P38398 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
BRCA1P38398 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC23.06■■□□□ 1.28
BRCA1P38398 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
BRCA1P38398 KRT89P-201ENST00000620027 1478 ntBASIC23.06■■□□□ 1.28
BRCA1P38398 KRT8P7-201ENST00000533003 1432 ntBASIC23.06■■□□□ 1.28
BRCA1P38398 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
BRCA1P38398 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC23.06■■□□□ 1.28
BRCA1P38398 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC23.06■■□□□ 1.28
BRCA1P38398 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC23.06■■□□□ 1.28
BRCA1P38398 PAM16-208ENST00000573553 722 ntTSL 2 BASIC23.06■■□□□ 1.28
BRCA1P38398 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
BRCA1P38398 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC23.06■■□□□ 1.28
BRCA1P38398 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
BRCA1P38398 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
BRCA1P38398 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC23.05■■□□□ 1.28
BRCA1P38398 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC23.05■■□□□ 1.28
BRCA1P38398 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
BRCA1P38398 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
BRCA1P38398 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
BRCA1P38398 GUSBP12-201ENST00000513727 720 ntBASIC23.05■■□□□ 1.28
BRCA1P38398 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC23.05■■□□□ 1.28
BRCA1P38398 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC23.05■■□□□ 1.28
BRCA1P38398 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
BRCA1P38398 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
BRCA1P38398 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC23.05■■□□□ 1.28
BRCA1P38398 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC23.05■■□□□ 1.28
BRCA1P38398 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
BRCA1P38398 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
BRCA1P38398 ME2-216ENST00000639850 2331 ntTSL 5 BASIC23.05■■□□□ 1.28
BRCA1P38398 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
BRCA1P38398 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
BRCA1P38398 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC23.05■■□□□ 1.28
BRCA1P38398 SDHAP1-207ENST00000440850 2000 ntBASIC23.05■■□□□ 1.28
BRCA1P38398 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
BRCA1P38398 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
BRCA1P38398 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
BRCA1P38398 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
BRCA1P38398 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
BRCA1P38398 UPF3AP3-201ENST00000420996 769 ntBASIC23.05■■□□□ 1.28
BRCA1P38398 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC23.05■■□□□ 1.28
BRCA1P38398 URGCP-206ENST00000446958 365 ntTSL 2 BASIC23.05■■□□□ 1.28
BRCA1P38398 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC23.05■■□□□ 1.28
BRCA1P38398 AL691403.2-201ENST00000618460 490 ntBASIC23.05■■□□□ 1.28
BRCA1P38398 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
BRCA1P38398 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
BRCA1P38398 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC23.04■■□□□ 1.28
BRCA1P38398 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
BRCA1P38398 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC23.04■■□□□ 1.28
BRCA1P38398 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC23.04■■□□□ 1.28
BRCA1P38398 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
BRCA1P38398 AC027796.2-201ENST00000575326 344 ntBASIC23.04■■□□□ 1.28
BRCA1P38398 LINC02084-201ENST00000606069 1096 ntBASIC23.04■■□□□ 1.28
BRCA1P38398 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
BRCA1P38398 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC23.04■■□□□ 1.28
BRCA1P38398 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
BRCA1P38398 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
BRCA1P38398 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
BRCA1P38398 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC23.03■■□□□ 1.28
BRCA1P38398 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
BRCA1P38398 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
BRCA1P38398 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
BRCA1P38398 RPSAP43-201ENST00000402237 625 ntBASIC23.03■■□□□ 1.28
BRCA1P38398 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
BRCA1P38398 HNRNPDP1-201ENST00000439535 754 ntBASIC23.03■■□□□ 1.28
BRCA1P38398 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC23.03■■□□□ 1.28
BRCA1P38398 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC23.03■■□□□ 1.28
BRCA1P38398 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC23.03■■□□□ 1.28
BRCA1P38398 NAT14-202ENST00000587400 416 ntTSL 5 BASIC23.03■■□□□ 1.28
BRCA1P38398 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
BRCA1P38398 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
BRCA1P38398 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
BRCA1P38398 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms