Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SMARCA1P28370 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC21.72■■□□□ 1.07
SMARCA1P28370 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC21.72■■□□□ 1.07
SMARCA1P28370 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMARCA1P28370 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMARCA1P28370 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SMARCA1P28370 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SMARCA1P28370 MIR564-202ENST00000385049 94 ntBASIC21.72■■□□□ 1.07
SMARCA1P28370 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC21.72■■□□□ 1.07
SMARCA1P28370 ATP5G1P1-201ENST00000448724 379 ntBASIC21.72■■□□□ 1.07
SMARCA1P28370 CFL2-205ENST00000555765 632 ntTSL 2 BASIC21.72■■□□□ 1.07
SMARCA1P28370 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC21.72■■□□□ 1.07
SMARCA1P28370 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMARCA1P28370 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SMARCA1P28370 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMARCA1P28370 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
SMARCA1P28370 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
SMARCA1P28370 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC21.72■■□□□ 1.07
SMARCA1P28370 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC21.72■■□□□ 1.07
SMARCA1P28370 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.72■■□□□ 1.07
SMARCA1P28370 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
SMARCA1P28370 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCA1P28370 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCA1P28370 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCA1P28370 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCA1P28370 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCA1P28370 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC21.71■■□□□ 1.07
SMARCA1P28370 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCA1P28370 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCA1P28370 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCA1P28370 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCA1P28370 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC21.71■■□□□ 1.07
SMARCA1P28370 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC21.71■■□□□ 1.07
SMARCA1P28370 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC21.71■■□□□ 1.07
SMARCA1P28370 NT5C-210ENST00000582160 860 ntTSL 2 BASIC21.71■■□□□ 1.07
SMARCA1P28370 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
SMARCA1P28370 AL031432.5-201ENST00000641059 760 ntBASIC21.71■■□□□ 1.07
SMARCA1P28370 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCA1P28370 AC008556.1-201ENST00000610908 2040 ntBASIC21.71■■□□□ 1.07
SMARCA1P28370 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC21.71■■□□□ 1.07
SMARCA1P28370 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCA1P28370 KRT8P7-201ENST00000533003 1432 ntBASIC21.71■■□□□ 1.07
SMARCA1P28370 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
SMARCA1P28370 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCA1P28370 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCA1P28370 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SMARCA1P28370 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMARCA1P28370 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMARCA1P28370 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SMARCA1P28370 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMARCA1P28370 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
SMARCA1P28370 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMARCA1P28370 ENSA-205ENST00000361532 792 ntTSL 2 BASIC21.7■■□□□ 1.06
SMARCA1P28370 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMARCA1P28370 AP000523.1-201ENST00000398242 1049 ntBASIC21.7■■□□□ 1.06
SMARCA1P28370 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC21.7■■□□□ 1.06
SMARCA1P28370 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC21.7■■□□□ 1.06
SMARCA1P28370 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC21.7■■□□□ 1.06
SMARCA1P28370 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC21.7■■□□□ 1.06
SMARCA1P28370 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC21.7■■□□□ 1.06
SMARCA1P28370 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SMARCA1P28370 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMARCA1P28370 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC21.7■■□□□ 1.06
SMARCA1P28370 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMARCA1P28370 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMARCA1P28370 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMARCA1P28370 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMARCA1P28370 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC21.7■■□□□ 1.06
SMARCA1P28370 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SMARCA1P28370 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SMARCA1P28370 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMARCA1P28370 NFYC-AS1-201ENST00000606277 1687 ntBASIC21.69■■□□□ 1.06
SMARCA1P28370 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMARCA1P28370 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC21.69■■□□□ 1.06
SMARCA1P28370 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC21.69■■□□□ 1.06
SMARCA1P28370 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMARCA1P28370 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SMARCA1P28370 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMARCA1P28370 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC21.69■■□□□ 1.06
SMARCA1P28370 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SMARCA1P28370 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC21.69■■□□□ 1.06
SMARCA1P28370 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
SMARCA1P28370 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMARCA1P28370 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC21.69■■□□□ 1.06
SMARCA1P28370 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC21.69■■□□□ 1.06
SMARCA1P28370 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC21.69■■□□□ 1.06
SMARCA1P28370 RN7SL850P-201ENST00000579959 291 ntBASIC21.69■■□□□ 1.06
SMARCA1P28370 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SMARCA1P28370 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC21.69■■□□□ 1.06
SMARCA1P28370 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMARCA1P28370 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
SMARCA1P28370 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
SMARCA1P28370 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC21.69■■□□□ 1.06
SMARCA1P28370 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMARCA1P28370 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SMARCA1P28370 BX323043.1-201ENST00000641006 1765 ntBASIC21.69■■□□□ 1.06
SMARCA1P28370 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SMARCA1P28370 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SMARCA1P28370 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SMARCA1P28370 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms