Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 AC091390.4-202ENST00000476426 537 ntBASIC18.14■□□□□ 0.49
SEMA3DO95025 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SEMA3DO95025 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
SEMA3DO95025 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.14■□□□□ 0.49
SEMA3DO95025 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.14■□□□□ 0.49
SEMA3DO95025 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SEMA3DO95025 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SEMA3DO95025 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
SEMA3DO95025 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
SEMA3DO95025 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.14■□□□□ 0.49
SEMA3DO95025 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
SEMA3DO95025 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SEMA3DO95025 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
SEMA3DO95025 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
SEMA3DO95025 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC18.13■□□□□ 0.49
SEMA3DO95025 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SEMA3DO95025 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SEMA3DO95025 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SEMA3DO95025 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC18.13■□□□□ 0.49
SEMA3DO95025 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SEMA3DO95025 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SEMA3DO95025 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
SEMA3DO95025 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SEMA3DO95025 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SEMA3DO95025 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SEMA3DO95025 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SEMA3DO95025 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SEMA3DO95025 PEX7-202ENST00000367756 680 ntTSL 3 BASIC18.13■□□□□ 0.49
SEMA3DO95025 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
SEMA3DO95025 AC012618.2-201ENST00000428058 849 ntBASIC18.13■□□□□ 0.49
SEMA3DO95025 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
SEMA3DO95025 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
SEMA3DO95025 AC083906.6-201ENST00000641366 219 ntBASIC18.13■□□□□ 0.49
SEMA3DO95025 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.13■□□□□ 0.49
SEMA3DO95025 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SEMA3DO95025 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
SEMA3DO95025 CROCCP3-202ENST00000420820 1947 ntBASIC18.13■□□□□ 0.49
SEMA3DO95025 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
SEMA3DO95025 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
SEMA3DO95025 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC18.13■□□□□ 0.49
SEMA3DO95025 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
SEMA3DO95025 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
SEMA3DO95025 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.13■□□□□ 0.49
SEMA3DO95025 AC093525.10-201ENST00000625130 1569 ntBASIC18.13■□□□□ 0.49
SEMA3DO95025 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SEMA3DO95025 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.12■□□□□ 0.49
SEMA3DO95025 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SEMA3DO95025 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SEMA3DO95025 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.12■□□□□ 0.49
SEMA3DO95025 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SEMA3DO95025 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.12■□□□□ 0.49
SEMA3DO95025 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.12■□□□□ 0.49
SEMA3DO95025 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SEMA3DO95025 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SEMA3DO95025 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC18.12■□□□□ 0.49
SEMA3DO95025 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.12■□□□□ 0.49
SEMA3DO95025 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
SEMA3DO95025 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SEMA3DO95025 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.12■□□□□ 0.49
SEMA3DO95025 AL158047.1-201ENST00000445918 881 ntBASIC18.12■□□□□ 0.49
SEMA3DO95025 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.12■□□□□ 0.49
SEMA3DO95025 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.12■□□□□ 0.49
SEMA3DO95025 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC18.12■□□□□ 0.49
SEMA3DO95025 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.12■□□□□ 0.49
SEMA3DO95025 AP001412.1-201ENST00000608405 714 ntBASIC18.12■□□□□ 0.49
SEMA3DO95025 AC011298.2-201ENST00000617989 482 ntBASIC18.12■□□□□ 0.49
SEMA3DO95025 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC18.12■□□□□ 0.49
SEMA3DO95025 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC18.12■□□□□ 0.49
SEMA3DO95025 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SEMA3DO95025 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.12■□□□□ 0.49
SEMA3DO95025 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SEMA3DO95025 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SEMA3DO95025 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SEMA3DO95025 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SEMA3DO95025 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SEMA3DO95025 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
SEMA3DO95025 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SEMA3DO95025 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SEMA3DO95025 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC18.12■□□□□ 0.49
SEMA3DO95025 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.12■□□□□ 0.49
SEMA3DO95025 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.12■□□□□ 0.49
SEMA3DO95025 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SEMA3DO95025 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SEMA3DO95025 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SEMA3DO95025 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SEMA3DO95025 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.11■□□□□ 0.49
SEMA3DO95025 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
SEMA3DO95025 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SEMA3DO95025 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SEMA3DO95025 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SEMA3DO95025 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SEMA3DO95025 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
SEMA3DO95025 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SEMA3DO95025 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.11■□□□□ 0.49
SEMA3DO95025 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC18.11■□□□□ 0.49
SEMA3DO95025 B3GAT3P1-201ENST00000471720 806 ntBASIC18.11■□□□□ 0.49
SEMA3DO95025 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SEMA3DO95025 MIR6786-201ENST00000616843 113 ntBASIC18.11■□□□□ 0.49
SEMA3DO95025 AC130371.2-201ENST00000619443 611 ntBASIC18.11■□□□□ 0.49
SEMA3DO95025 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms