Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC18.5■□□□□ 0.55
SDC3O75056 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.5■□□□□ 0.55
SDC3O75056 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.5■□□□□ 0.55
SDC3O75056 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC18.5■□□□□ 0.55
SDC3O75056 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SDC3O75056 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SDC3O75056 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.5■□□□□ 0.55
SDC3O75056 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.5■□□□□ 0.55
SDC3O75056 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
SDC3O75056 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SDC3O75056 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SDC3O75056 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SDC3O75056 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SDC3O75056 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SDC3O75056 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SDC3O75056 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SDC3O75056 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SDC3O75056 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SDC3O75056 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SDC3O75056 AL645929.1-201ENST00000420084 975 ntBASIC18.49■□□□□ 0.55
SDC3O75056 TPM4P1-201ENST00000436100 807 ntBASIC18.49■□□□□ 0.55
SDC3O75056 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC18.49■□□□□ 0.55
SDC3O75056 AC034232.1-201ENST00000506026 1064 ntBASIC18.49■□□□□ 0.55
SDC3O75056 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.49■□□□□ 0.55
SDC3O75056 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC18.49■□□□□ 0.55
SDC3O75056 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.49■□□□□ 0.55
SDC3O75056 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SDC3O75056 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
SDC3O75056 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SDC3O75056 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.49■□□□□ 0.55
SDC3O75056 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SDC3O75056 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SDC3O75056 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.49■□□□□ 0.55
SDC3O75056 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SDC3O75056 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.49■□□□□ 0.55
SDC3O75056 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SDC3O75056 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
SDC3O75056 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SDC3O75056 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SDC3O75056 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.49■□□□□ 0.55
SDC3O75056 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SDC3O75056 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SDC3O75056 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SDC3O75056 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
SDC3O75056 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SDC3O75056 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.48■□□□□ 0.55
SDC3O75056 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.48■□□□□ 0.55
SDC3O75056 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SDC3O75056 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SDC3O75056 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SDC3O75056 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.48■□□□□ 0.55
SDC3O75056 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC18.48■□□□□ 0.55
SDC3O75056 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SDC3O75056 MCCD1P1-208ENST00000445732 328 ntBASIC18.48■□□□□ 0.55
SDC3O75056 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.48■□□□□ 0.55
SDC3O75056 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC18.48■□□□□ 0.55
SDC3O75056 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
SDC3O75056 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
SDC3O75056 AC092119.3-201ENST00000612618 583 ntBASIC18.48■□□□□ 0.55
SDC3O75056 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SDC3O75056 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.48■□□□□ 0.55
SDC3O75056 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SDC3O75056 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SDC3O75056 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
SDC3O75056 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SDC3O75056 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.48■□□□□ 0.55
SDC3O75056 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SDC3O75056 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC18.47■□□□□ 0.55
SDC3O75056 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SDC3O75056 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
SDC3O75056 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SDC3O75056 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SDC3O75056 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC18.47■□□□□ 0.55
SDC3O75056 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
SDC3O75056 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SDC3O75056 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.47■□□□□ 0.55
SDC3O75056 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
SDC3O75056 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC18.47■□□□□ 0.55
SDC3O75056 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC18.47■□□□□ 0.55
SDC3O75056 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.47■□□□□ 0.55
SDC3O75056 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.47■□□□□ 0.55
SDC3O75056 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC18.47■□□□□ 0.55
SDC3O75056 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.47■□□□□ 0.55
SDC3O75056 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.47■□□□□ 0.55
SDC3O75056 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.47■□□□□ 0.55
SDC3O75056 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SDC3O75056 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.47■□□□□ 0.55
SDC3O75056 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.47■□□□□ 0.55
SDC3O75056 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SDC3O75056 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.46■□□□□ 0.55
SDC3O75056 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SDC3O75056 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SDC3O75056 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SDC3O75056 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SDC3O75056 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC18.46■□□□□ 0.55
SDC3O75056 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC18.46■□□□□ 0.55
SDC3O75056 CNP-204ENST00000472031 1019 ntTSL 2 BASIC18.46■□□□□ 0.55
SDC3O75056 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SDC3O75056 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SDC3O75056 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms