Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC11O43248 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC11O43248 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC19.29■□□□□ 0.68
HOXC11O43248 AC024243.1-201ENST00000609234 778 ntBASIC19.29■□□□□ 0.68
HOXC11O43248 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.29■□□□□ 0.68
HOXC11O43248 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC19.29■□□□□ 0.68
HOXC11O43248 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.29■□□□□ 0.68
HOXC11O43248 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC11O43248 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC11O43248 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
HOXC11O43248 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
HOXC11O43248 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.29■□□□□ 0.68
HOXC11O43248 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
HOXC11O43248 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC11O43248 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC19.28■□□□□ 0.68
HOXC11O43248 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC11O43248 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC11O43248 HBZP1-201ENST00000354915 429 ntBASIC19.28■□□□□ 0.68
HOXC11O43248 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC19.28■□□□□ 0.68
HOXC11O43248 SPDYE13P-201ENST00000445314 798 ntBASIC19.28■□□□□ 0.68
HOXC11O43248 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC11O43248 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC19.28■□□□□ 0.68
HOXC11O43248 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC11O43248 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC19.28■□□□□ 0.68
HOXC11O43248 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC19.28■□□□□ 0.68
HOXC11O43248 CLN6-214ENST00000636314 442 ntTSL 3 BASIC19.28■□□□□ 0.68
HOXC11O43248 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC11O43248 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC11O43248 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
HOXC11O43248 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC11O43248 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC11O43248 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC11O43248 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.28■□□□□ 0.68
HOXC11O43248 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.28■□□□□ 0.68
HOXC11O43248 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
HOXC11O43248 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
HOXC11O43248 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC11O43248 AL109659.2-201ENST00000606809 1674 ntBASIC19.27■□□□□ 0.68
HOXC11O43248 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC11O43248 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC11O43248 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC11O43248 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC11O43248 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC11O43248 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.27■□□□□ 0.68
HOXC11O43248 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC19.27■□□□□ 0.68
HOXC11O43248 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC11O43248 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC11O43248 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC11O43248 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC19.27■□□□□ 0.68
HOXC11O43248 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
HOXC11O43248 GRAMD4P1-201ENST00000435181 1110 ntBASIC19.27■□□□□ 0.68
HOXC11O43248 SEC1P-202ENST00000473944 940 ntBASIC19.27■□□□□ 0.68
HOXC11O43248 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC19.27■□□□□ 0.68
HOXC11O43248 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC19.27■□□□□ 0.68
HOXC11O43248 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC19.27■□□□□ 0.68
HOXC11O43248 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC11O43248 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
HOXC11O43248 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
HOXC11O43248 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
HOXC11O43248 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HOXC11O43248 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
HOXC11O43248 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC11O43248 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
HOXC11O43248 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.26■□□□□ 0.67
HOXC11O43248 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC11O43248 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC11O43248 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC11O43248 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
HOXC11O43248 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC11O43248 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC11O43248 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC19.26■□□□□ 0.67
HOXC11O43248 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC19.26■□□□□ 0.67
HOXC11O43248 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC19.26■□□□□ 0.67
HOXC11O43248 AC069148.1-201ENST00000608741 768 ntBASIC19.26■□□□□ 0.67
HOXC11O43248 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC19.26■□□□□ 0.67
HOXC11O43248 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC11O43248 KATNBL1P6-202ENST00000562413 1466 ntBASIC19.26■□□□□ 0.67
HOXC11O43248 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.26■□□□□ 0.67
HOXC11O43248 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC11O43248 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.26■□□□□ 0.67
HOXC11O43248 AL512353.2-201ENST00000448759 1962 ntBASIC19.26■□□□□ 0.67
HOXC11O43248 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
HOXC11O43248 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.26■□□□□ 0.67
HOXC11O43248 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
HOXC11O43248 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC11O43248 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC19.25■□□□□ 0.67
HOXC11O43248 FEM1AP3-201ENST00000403722 1741 ntBASIC19.25■□□□□ 0.67
HOXC11O43248 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC11O43248 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC11O43248 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
HOXC11O43248 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC11O43248 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC11O43248 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC19.25■□□□□ 0.67
HOXC11O43248 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC11O43248 FXN-203ENST00000396366 922 ntTSL 2 BASIC19.25■□□□□ 0.67
HOXC11O43248 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
HOXC11O43248 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC19.25■□□□□ 0.67
HOXC11O43248 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.25■□□□□ 0.67
HOXC11O43248 AC112497.1-201ENST00000624824 639 ntBASIC19.25■□□□□ 0.67
HOXC11O43248 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms