Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 CKMT1A-202ENST00000413453 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH4O15457 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MSH4O15457 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH4O15457 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH4O15457 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH4O15457 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH4O15457 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH4O15457 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH4O15457 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH4O15457 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH4O15457 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC21.26■□□□□ 0.99
MSH4O15457 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC21.26■□□□□ 0.99
MSH4O15457 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MSH4O15457 AC141257.4-201ENST00000634557 245 ntBASIC21.26■□□□□ 0.99
MSH4O15457 AC136944.6-201ENST00000634818 245 ntBASIC21.26■□□□□ 0.99
MSH4O15457 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
MSH4O15457 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH4O15457 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC21.26■□□□□ 0.99
MSH4O15457 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH4O15457 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC21.26■□□□□ 0.99
MSH4O15457 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH4O15457 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH4O15457 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH4O15457 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC21.25■□□□□ 0.99
MSH4O15457 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH4O15457 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH4O15457 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH4O15457 AC013268.5-201ENST00000454928 1959 ntTSL 2 BASIC21.25■□□□□ 0.99
MSH4O15457 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH4O15457 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
MSH4O15457 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH4O15457 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH4O15457 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH4O15457 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
MSH4O15457 CD70-202ENST00000423145 881 ntTSL 2 BASIC21.25■□□□□ 0.99
MSH4O15457 AC104076.2-201ENST00000448912 469 ntBASIC21.25■□□□□ 0.99
MSH4O15457 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
MSH4O15457 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH4O15457 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
MSH4O15457 AC006011.2-201ENST00000621313 1158 ntBASIC21.25■□□□□ 0.99
MSH4O15457 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
MSH4O15457 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH4O15457 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
MSH4O15457 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
MSH4O15457 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC21.25■□□□□ 0.99
MSH4O15457 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH4O15457 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
MSH4O15457 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
MSH4O15457 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH4O15457 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
MSH4O15457 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH4O15457 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC21.24■□□□□ 0.99
MSH4O15457 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH4O15457 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH4O15457 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH4O15457 ILF2-202ENST00000368681 726 ntTSL 2 BASIC21.24■□□□□ 0.99
MSH4O15457 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
MSH4O15457 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC21.24■□□□□ 0.99
MSH4O15457 MCCD1P1-208ENST00000445732 328 ntBASIC21.24■□□□□ 0.99
MSH4O15457 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC21.24■□□□□ 0.99
MSH4O15457 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC21.24■□□□□ 0.99
MSH4O15457 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
MSH4O15457 NT5C-210ENST00000582160 860 ntTSL 2 BASIC21.24■□□□□ 0.99
MSH4O15457 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH4O15457 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH4O15457 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
MSH4O15457 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH4O15457 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
MSH4O15457 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC21.24■□□□□ 0.99
MSH4O15457 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC21.24■□□□□ 0.99
MSH4O15457 DMD-208ENST00000378680 1858 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
MSH4O15457 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
MSH4O15457 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
MSH4O15457 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSH4O15457 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSH4O15457 AC008556.1-201ENST00000610908 2040 ntBASIC21.23■□□□□ 0.99
MSH4O15457 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
MSH4O15457 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSH4O15457 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSH4O15457 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MSH4O15457 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC21.23■□□□□ 0.99
MSH4O15457 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC21.23■□□□□ 0.99
MSH4O15457 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MSH4O15457 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC21.23■□□□□ 0.99
MSH4O15457 AL512604.3-201ENST00000569583 964 ntBASIC21.23■□□□□ 0.99
MSH4O15457 WWOX-216ENST00000569818 525 ntBASIC21.23■□□□□ 0.99
MSH4O15457 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC21.23■□□□□ 0.99
MSH4O15457 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSH4O15457 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC21.23■□□□□ 0.99
MSH4O15457 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC21.23■□□□□ 0.99
MSH4O15457 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
MSH4O15457 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSH4O15457 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSH4O15457 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC21.23■□□□□ 0.99
MSH4O15457 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
MSH4O15457 AC036111.1-201ENST00000533973 1582 ntBASIC21.23■□□□□ 0.99
MSH4O15457 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
MSH4O15457 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC21.22■□□□□ 0.99
MSH4O15457 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
MSH4O15457 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms