Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC144BQ3MJ40 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC3.16□□□□□ -1.9
CCDC144BQ3MJ40 CENPF-206ENST00000614578 528 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC144BQ3MJ40 AL357075.2-201ENST00000614906 189 ntBASIC3.16□□□□□ -1.9
CCDC144BQ3MJ40 Six3os1_7.1-201ENST00000621512 201 ntBASIC3.16□□□□□ -1.9
CCDC144BQ3MJ40 Y_RNA.230-201ENST00000364348 109 ntBASIC3.15□□□□□ -1.91
CCDC144BQ3MJ40 Y_RNA.462-201ENST00000384268 102 ntBASIC3.15□□□□□ -1.91
CCDC144BQ3MJ40 MIR512-1-201ENST00000384913 84 ntBASIC3.15□□□□□ -1.91
CCDC144BQ3MJ40 MIR29C-201ENST00000385231 88 ntBASIC3.15□□□□□ -1.91
CCDC144BQ3MJ40 ELOCP21-201ENST00000412558 336 ntBASIC3.15□□□□□ -1.91
CCDC144BQ3MJ40 AL390729.2-201ENST00000416137 156 ntBASIC3.15□□□□□ -1.91
CCDC144BQ3MJ40 AC113618.1-201ENST00000416747 285 ntBASIC3.15□□□□□ -1.91
CCDC144BQ3MJ40 DPH3P2-201ENST00000422618 250 ntBASIC3.15□□□□□ -1.91
CCDC144BQ3MJ40 MTND2P23-201ENST00000422990 651 ntBASIC3.15□□□□□ -1.91
CCDC144BQ3MJ40 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC144BQ3MJ40 RNU6-1143P-201ENST00000516125 104 ntBASIC3.15□□□□□ -1.91
CCDC144BQ3MJ40 RNA5SP137-201ENST00000516833 135 ntBASIC3.15□□□□□ -1.91
CCDC144BQ3MJ40 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC3.15□□□□□ -1.91
CCDC144BQ3MJ40 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC144BQ3MJ40 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
CCDC144BQ3MJ40 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
CCDC144BQ3MJ40 Y_RNA.183-201ENST00000363882 113 ntBASIC3.14□□□□□ -1.91
CCDC144BQ3MJ40 RNA5SP21-201ENST00000410917 96 ntBASIC3.14□□□□□ -1.91
CCDC144BQ3MJ40 AL357134.1-201ENST00000445848 426 ntBASIC3.14□□□□□ -1.91
CCDC144BQ3MJ40 RPL26P26-201ENST00000480251 434 ntBASIC3.14□□□□□ -1.91
CCDC144BQ3MJ40 SNORA40.15-201ENST00000516884 107 ntBASIC3.14□□□□□ -1.91
CCDC144BQ3MJ40 AC131281.1-201ENST00000522984 164 ntBASIC3.14□□□□□ -1.91
CCDC144BQ3MJ40 AC087441.2-201ENST00000529141 262 ntBASIC3.14□□□□□ -1.91
CCDC144BQ3MJ40 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC144BQ3MJ40 AK6P2-201ENST00000549020 471 ntBASIC3.14□□□□□ -1.91
CCDC144BQ3MJ40 MIR3684-201ENST00000579779 74 ntBASIC3.14□□□□□ -1.91
CCDC144BQ3MJ40 AC011476.5-201ENST00000615594 130 ntBASIC3.14□□□□□ -1.91
CCDC144BQ3MJ40 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC144BQ3MJ40 Y_RNA.459-201ENST00000384251 102 ntBASIC3.13□□□□□ -1.91
CCDC144BQ3MJ40 SNORD14D-201ENST00000384390 87 ntBASIC3.13□□□□□ -1.91
CCDC144BQ3MJ40 RNU6-1235P-201ENST00000384559 107 ntBASIC3.13□□□□□ -1.91
CCDC144BQ3MJ40 MIR548B-201ENST00000385247 97 ntBASIC3.13□□□□□ -1.91
CCDC144BQ3MJ40 AL079342.1-201ENST00000401460 267 ntBASIC3.13□□□□□ -1.91
CCDC144BQ3MJ40 AL139095.1-201ENST00000404326 391 ntBASIC3.13□□□□□ -1.91
CCDC144BQ3MJ40 RNU5A-5P-201ENST00000411054 116 ntBASIC3.13□□□□□ -1.91
CCDC144BQ3MJ40 RNA5SP508-201ENST00000411327 119 ntBASIC3.13□□□□□ -1.91
CCDC144BQ3MJ40 RAB28P5-201ENST00000427490 651 ntBASIC3.13□□□□□ -1.91
CCDC144BQ3MJ40 RNU6-498P-201ENST00000459468 107 ntBASIC3.13□□□□□ -1.91
CCDC144BQ3MJ40 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC3.13□□□□□ -1.91
CCDC144BQ3MJ40 AC091544.4-201ENST00000555268 342 ntBASIC3.13□□□□□ -1.91
CCDC144BQ3MJ40 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC144BQ3MJ40 AC136443.5-201ENST00000603741 370 ntBASIC3.13□□□□□ -1.91
CCDC144BQ3MJ40 snoZ196.1-201ENST00000625269 89 ntBASIC3.13□□□□□ -1.91
CCDC144BQ3MJ40 MIR3674-201ENST00000636576 68 ntBASIC3.13□□□□□ -1.91
CCDC144BQ3MJ40 AC092593.1-201ENST00000515413 1815 ntBASIC3.13□□□□□ -1.91
CCDC144BQ3MJ40 RNU6-626P-201ENST00000363354 107 ntBASIC3.12□□□□□ -1.91
CCDC144BQ3MJ40 SNORA72.2-201ENST00000365028 127 ntBASIC3.12□□□□□ -1.91
CCDC144BQ3MJ40 RNU6-160P-201ENST00000384591 107 ntBASIC3.12□□□□□ -1.91
CCDC144BQ3MJ40 MIR1185-2-201ENST00000408687 86 ntBASIC3.12□□□□□ -1.91
CCDC144BQ3MJ40 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC3.12□□□□□ -1.91
CCDC144BQ3MJ40 AC005176.2-201ENST00000596933 147 ntBASIC3.12□□□□□ -1.91
CCDC144BQ3MJ40 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC144BQ3MJ40 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC144BQ3MJ40 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
CCDC144BQ3MJ40 Y_RNA.153-201ENST00000363615 91 ntBASIC3.11□□□□□ -1.91
CCDC144BQ3MJ40 MTCO1P44-201ENST00000441935 243 ntBASIC3.11□□□□□ -1.91
CCDC144BQ3MJ40 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC3.11□□□□□ -1.91
CCDC144BQ3MJ40 AL513328.1-201ENST00000446460 224 ntBASIC3.11□□□□□ -1.91
CCDC144BQ3MJ40 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC144BQ3MJ40 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC144BQ3MJ40 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.11□□□□□ -1.91
CCDC144BQ3MJ40 AC130454.1-201ENST00000622948 401 ntBASIC3.11□□□□□ -1.91
CCDC144BQ3MJ40 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.11□□□□□ -1.91
CCDC144BQ3MJ40 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.1□□□□□ -1.91
CCDC144BQ3MJ40 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.1□□□□□ -1.91
CCDC144BQ3MJ40 RNA5SP68-201ENST00000363885 119 ntBASIC3.1□□□□□ -1.91
CCDC144BQ3MJ40 RNU6-961P-201ENST00000363893 105 ntBASIC3.1□□□□□ -1.91
CCDC144BQ3MJ40 SNORA25.6-201ENST00000364121 118 ntBASIC3.1□□□□□ -1.91
CCDC144BQ3MJ40 Y_RNA.210-201ENST00000364161 110 ntBASIC3.1□□□□□ -1.91
CCDC144BQ3MJ40 RNU6-20P-201ENST00000384106 107 ntBASIC3.1□□□□□ -1.91
CCDC144BQ3MJ40 SNORD63-201ENST00000384262 68 ntBASIC3.1□□□□□ -1.91
CCDC144BQ3MJ40 AC008134.1-201ENST00000420943 193 ntBASIC3.1□□□□□ -1.91
CCDC144BQ3MJ40 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.1□□□□□ -1.91
CCDC144BQ3MJ40 RNU1-131P-201ENST00000458943 161 ntBASIC3.1□□□□□ -1.91
CCDC144BQ3MJ40 RPS27AP9-201ENST00000477681 438 ntBASIC3.1□□□□□ -1.91
CCDC144BQ3MJ40 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC144BQ3MJ40 RNU6-897P-201ENST00000517135 105 ntBASIC3.1□□□□□ -1.91
CCDC144BQ3MJ40 AL031274.2-201ENST00000599419 203 ntBASIC3.1□□□□□ -1.91
CCDC144BQ3MJ40 RAC1P9-201ENST00000604990 392 ntBASIC3.1□□□□□ -1.91
CCDC144BQ3MJ40 PRR13P7-201ENST00000605538 430 ntBASIC3.1□□□□□ -1.91
CCDC144BQ3MJ40 MIR6817-201ENST00000615588 66 ntBASIC3.1□□□□□ -1.91
CCDC144BQ3MJ40 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.1□□□□□ -1.91
CCDC144BQ3MJ40 LINC02555-201ENST00000563933 1951 ntBASIC3.1□□□□□ -1.91
CCDC144BQ3MJ40 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
CCDC144BQ3MJ40 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
CCDC144BQ3MJ40 RNU6-418P-201ENST00000384035 107 ntBASIC3.09□□□□□ -1.91
CCDC144BQ3MJ40 MIR1262-201ENST00000408276 93 ntBASIC3.09□□□□□ -1.91
CCDC144BQ3MJ40 HMGN2P35-201ENST00000412164 270 ntBASIC3.09□□□□□ -1.91
CCDC144BQ3MJ40 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC3.09□□□□□ -1.91
CCDC144BQ3MJ40 AC139712.2-201ENST00000424302 339 ntBASIC3.09□□□□□ -1.91
CCDC144BQ3MJ40 AL139109.1-201ENST00000455491 297 ntBASIC3.09□□□□□ -1.91
CCDC144BQ3MJ40 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC3.09□□□□□ -1.91
CCDC144BQ3MJ40 RNU6-221P-201ENST00000459541 99 ntBASIC3.09□□□□□ -1.91
CCDC144BQ3MJ40 AC010531.2-201ENST00000465012 153 ntBASIC3.09□□□□□ -1.91
CCDC144BQ3MJ40 TRBV12-1-201ENST00000479785 344 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 108.7 ms