Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC010401.1-201ENST00000463867 348 ntBASIC4.41□□□□□ -1.7
VPS9D1Q9Y2B5 RPS26P28-201ENST00000470806 348 ntBASIC4.41□□□□□ -1.7
VPS9D1Q9Y2B5 AC015795.1-201ENST00000513669 327 ntBASIC4.41□□□□□ -1.7
VPS9D1Q9Y2B5 Y_RNA.773-201ENST00000607168 90 ntBASIC4.41□□□□□ -1.7
VPS9D1Q9Y2B5 AC012442.3-202ENST00000636742 206 ntBASIC4.41□□□□□ -1.7
VPS9D1Q9Y2B5 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
VPS9D1Q9Y2B5 FAM35DP-201ENST00000323387 2712 ntBASIC4.41□□□□□ -1.7
VPS9D1Q9Y2B5 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS9D1Q9Y2B5 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.41□□□□□ -1.7
VPS9D1Q9Y2B5 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC4.41□□□□□ -1.7
VPS9D1Q9Y2B5 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
VPS9D1Q9Y2B5 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC4.41□□□□□ -1.7
VPS9D1Q9Y2B5 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.41□□□□□ -1.7
VPS9D1Q9Y2B5 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.41□□□□□ -1.7
VPS9D1Q9Y2B5 VIRMA-201ENST00000297591 6528 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
VPS9D1Q9Y2B5 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.4□□□□□ -1.7
VPS9D1Q9Y2B5 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC4.4□□□□□ -1.7
VPS9D1Q9Y2B5 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
VPS9D1Q9Y2B5 RNU6-50P-201ENST00000362356 103 ntBASIC4.4□□□□□ -1.71
VPS9D1Q9Y2B5 RNU6-509P-201ENST00000363519 107 ntBASIC4.4□□□□□ -1.71
VPS9D1Q9Y2B5 SNORD116-10-201ENST00000363791 102 ntBASIC4.4□□□□□ -1.71
VPS9D1Q9Y2B5 Y_RNA.191-201ENST00000363972 113 ntBASIC4.4□□□□□ -1.71
VPS9D1Q9Y2B5 RNU1-96P-201ENST00000364163 162 ntBASIC4.4□□□□□ -1.71
VPS9D1Q9Y2B5 SNORD31B-201ENST00000364977 69 ntBASIC4.4□□□□□ -1.71
VPS9D1Q9Y2B5 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.4□□□□□ -1.71
VPS9D1Q9Y2B5 AC073264.2-201ENST00000448886 166 ntBASIC4.4□□□□□ -1.71
VPS9D1Q9Y2B5 AC064859.1-201ENST00000624741 174 ntBASIC4.4□□□□□ -1.71
VPS9D1Q9Y2B5 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
VPS9D1Q9Y2B5 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS9D1Q9Y2B5 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC4.4□□□□□ -1.71
VPS9D1Q9Y2B5 UTRN-204ENST00000367545 12339 ntAPPRIS P1 TSL 5 BASIC4.4□□□□□ -1.71
VPS9D1Q9Y2B5 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.4□□□□□ -1.71
VPS9D1Q9Y2B5 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.4□□□□□ -1.71
VPS9D1Q9Y2B5 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
VPS9D1Q9Y2B5 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC4.39□□□□□ -1.71
VPS9D1Q9Y2B5 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.39□□□□□ -1.71
VPS9D1Q9Y2B5 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS9D1Q9Y2B5 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.39□□□□□ -1.71
VPS9D1Q9Y2B5 RNA5SP28-201ENST00000363841 119 ntBASIC4.39□□□□□ -1.71
VPS9D1Q9Y2B5 Y_RNA.467-201ENST00000384297 102 ntBASIC4.39□□□□□ -1.71
VPS9D1Q9Y2B5 MIR548O-201ENST00000408583 114 ntBASIC4.39□□□□□ -1.71
VPS9D1Q9Y2B5 RNU4-69P-201ENST00000410677 143 ntBASIC4.39□□□□□ -1.71
VPS9D1Q9Y2B5 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC4.39□□□□□ -1.71
VPS9D1Q9Y2B5 AC099677.2-201ENST00000436385 175 ntBASIC4.39□□□□□ -1.71
VPS9D1Q9Y2B5 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.39□□□□□ -1.71
VPS9D1Q9Y2B5 PARP4P3-201ENST00000510265 317 ntBASIC4.39□□□□□ -1.71
VPS9D1Q9Y2B5 SCGB1D5P-201ENST00000515134 247 ntBASIC4.39□□□□□ -1.71
VPS9D1Q9Y2B5 AC079587.1-201ENST00000603846 277 ntBASIC4.39□□□□□ -1.71
VPS9D1Q9Y2B5 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.39□□□□□ -1.71
VPS9D1Q9Y2B5 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC4.39□□□□□ -1.71
VPS9D1Q9Y2B5 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
VPS9D1Q9Y2B5 TMEM38B-201ENST00000374688 3956 ntTSL 2 BASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 OR9H1P-201ENST00000446393 4888 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 RNU1-15P-201ENST00000353977 144 ntBASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 RNU6-590P-201ENST00000365039 107 ntBASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 RNU6-234P-201ENST00000365229 104 ntBASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 Y_RNA.377-201ENST00000365644 108 ntBASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 PVALB-202ENST00000404171 422 ntTSL 2 BASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 RPS16P5-201ENST00000406501 404 ntBASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 RNA5SP468-201ENST00000516782 93 ntBASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 Y_RNA.714-201ENST00000517065 90 ntBASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 DLEU2_5.2-201ENST00000610606 84 ntBASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 SNX18P1Y-201ENST00000616231 511 ntBASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 ZNF271P-202ENST00000465539 1970 ntBASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC4.38□□□□□ -1.71
VPS9D1Q9Y2B5 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS9D1Q9Y2B5 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS9D1Q9Y2B5 RNU1-32P-201ENST00000363937 159 ntBASIC4.37□□□□□ -1.71
VPS9D1Q9Y2B5 RNU6-1229P-201ENST00000364295 107 ntBASIC4.37□□□□□ -1.71
VPS9D1Q9Y2B5 SNORA14A-201ENST00000364773 135 ntBASIC4.37□□□□□ -1.71
VPS9D1Q9Y2B5 MIR659-201ENST00000384963 97 ntBASIC4.37□□□□□ -1.71
VPS9D1Q9Y2B5 MIR802-201ENST00000390235 94 ntBASIC4.37□□□□□ -1.71
VPS9D1Q9Y2B5 RNU2-40P-201ENST00000410833 196 ntBASIC4.37□□□□□ -1.71
VPS9D1Q9Y2B5 AC011998.1-201ENST00000433403 117 ntBASIC4.37□□□□□ -1.71
VPS9D1Q9Y2B5 RNU7-80P-201ENST00000459562 61 ntBASIC4.37□□□□□ -1.71
VPS9D1Q9Y2B5 RN7SL354P-201ENST00000469282 294 ntBASIC4.37□□□□□ -1.71
VPS9D1Q9Y2B5 RPL36AP48-201ENST00000485521 314 ntBASIC4.37□□□□□ -1.71
VPS9D1Q9Y2B5 KRTAP5-14P-201ENST00000502328 121 ntBASIC4.37□□□□□ -1.71
VPS9D1Q9Y2B5 IGHVII-40-1-201ENST00000517316 58 ntBASIC4.37□□□□□ -1.71
VPS9D1Q9Y2B5 AC079598.5-201ENST00000547460 117 ntBASIC4.37□□□□□ -1.71
VPS9D1Q9Y2B5 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.37□□□□□ -1.71
VPS9D1Q9Y2B5 AL160290.3-201ENST00000604869 165 ntBASIC4.37□□□□□ -1.71
VPS9D1Q9Y2B5 MIR6891-201ENST00000618788 93 ntBASIC4.37□□□□□ -1.71
VPS9D1Q9Y2B5 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS9D1Q9Y2B5 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.37□□□□□ -1.71
VPS9D1Q9Y2B5 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS9D1Q9Y2B5 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
VPS9D1Q9Y2B5 DMD-230ENST00000620040 13746 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
VPS9D1Q9Y2B5 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 111.7 ms