Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC140Q96MF4 AL159152.1-201ENST00000635019 2587 ntBASIC2.92□□□□□ -1.94
CCDC140Q96MF4 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC2.92□□□□□ -1.94
CCDC140Q96MF4 RNA5SP322-201ENST00000363617 119 ntBASIC2.92□□□□□ -1.94
CCDC140Q96MF4 RNU4-13P-201ENST00000364019 141 ntBASIC2.92□□□□□ -1.94
CCDC140Q96MF4 Y_RNA.412-201ENST00000384001 104 ntBASIC2.92□□□□□ -1.94
CCDC140Q96MF4 RNU6-1135P-201ENST00000411083 103 ntBASIC2.92□□□□□ -1.94
CCDC140Q96MF4 AC104332.2-201ENST00000429959 156 ntBASIC2.92□□□□□ -1.94
CCDC140Q96MF4 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC140Q96MF4 AL353705.1-201ENST00000433468 480 ntBASIC2.92□□□□□ -1.94
CCDC140Q96MF4 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC140Q96MF4 HMGN2P34-201ENST00000437647 269 ntBASIC2.92□□□□□ -1.94
CCDC140Q96MF4 AL357134.1-201ENST00000445848 426 ntBASIC2.92□□□□□ -1.94
CCDC140Q96MF4 AC245047.8-201ENST00000456455 284 ntBASIC2.92□□□□□ -1.94
CCDC140Q96MF4 RN7SL330P-201ENST00000469709 307 ntBASIC2.92□□□□□ -1.94
CCDC140Q96MF4 RNU6-453P-201ENST00000516819 85 ntBASIC2.92□□□□□ -1.94
CCDC140Q96MF4 RN7SKP209-201ENST00000516888 304 ntBASIC2.92□□□□□ -1.94
CCDC140Q96MF4 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC140Q96MF4 AC004147.3-201ENST00000577709 375 ntTSL 3 BASIC2.92□□□□□ -1.94
CCDC140Q96MF4 MIR3144-201ENST00000579460 79 ntBASIC2.92□□□□□ -1.94
CCDC140Q96MF4 MIR4724-201ENST00000579485 89 ntBASIC2.92□□□□□ -1.94
CCDC140Q96MF4 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC140Q96MF4 MIR4438-201ENST00000585271 93 ntBASIC2.92□□□□□ -1.94
CCDC140Q96MF4 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC140Q96MF4 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC140Q96MF4 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC140Q96MF4 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC2.92□□□□□ -1.94
CCDC140Q96MF4 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC140Q96MF4 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC2.92□□□□□ -1.94
CCDC140Q96MF4 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC2.92□□□□□ -1.94
CCDC140Q96MF4 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC2.91□□□□□ -1.94
CCDC140Q96MF4 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC140Q96MF4 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC140Q96MF4 MAPK10-362ENST00000641864 4484 ntBASIC2.91□□□□□ -1.94
CCDC140Q96MF4 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC140Q96MF4 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC2.91□□□□□ -1.94
CCDC140Q96MF4 MIR340-201ENST00000362125 95 ntBASIC2.91□□□□□ -1.94
CCDC140Q96MF4 MIR367-201ENST00000362299 68 ntBASIC2.91□□□□□ -1.94
CCDC140Q96MF4 Y_RNA.170-201ENST00000363746 110 ntBASIC2.91□□□□□ -1.94
CCDC140Q96MF4 MIR30B-201ENST00000384850 88 ntBASIC2.91□□□□□ -1.94
CCDC140Q96MF4 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.91□□□□□ -1.94
CCDC140Q96MF4 SNORA3.3-201ENST00000408712 125 ntBASIC2.91□□□□□ -1.94
CCDC140Q96MF4 AC060773.1-201ENST00000421698 310 ntBASIC2.91□□□□□ -1.94
CCDC140Q96MF4 AC244505.4-201ENST00000434905 287 ntBASIC2.91□□□□□ -1.94
CCDC140Q96MF4 AC009238.1-201ENST00000442165 424 ntBASIC2.91□□□□□ -1.94
CCDC140Q96MF4 SSXP5-201ENST00000443473 287 ntBASIC2.91□□□□□ -1.94
CCDC140Q96MF4 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.91□□□□□ -1.94
CCDC140Q96MF4 AC009237.6-201ENST00000446969 424 ntBASIC2.91□□□□□ -1.94
CCDC140Q96MF4 RPS27AP9-201ENST00000477681 438 ntBASIC2.91□□□□□ -1.94
CCDC140Q96MF4 RPL23AP54-201ENST00000495129 419 ntBASIC2.91□□□□□ -1.94
CCDC140Q96MF4 MTND5P41-201ENST00000517498 206 ntBASIC2.91□□□□□ -1.94
CCDC140Q96MF4 AC023632.4-201ENST00000517783 191 ntBASIC2.91□□□□□ -1.94
CCDC140Q96MF4 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC2.91□□□□□ -1.94
CCDC140Q96MF4 MIR92B-201ENST00000607575 96 ntBASIC2.91□□□□□ -1.94
CCDC140Q96MF4 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC140Q96MF4 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC2.91□□□□□ -1.94
CCDC140Q96MF4 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.94
CCDC140Q96MF4 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
CCDC140Q96MF4 RNU1-18P-201ENST00000363062 164 ntBASIC2.9□□□□□ -1.95
CCDC140Q96MF4 Y_RNA.121-201ENST00000363309 113 ntBASIC2.9□□□□□ -1.95
CCDC140Q96MF4 SNORA62.3-201ENST00000365110 153 ntBASIC2.9□□□□□ -1.95
CCDC140Q96MF4 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.9□□□□□ -1.95
CCDC140Q96MF4 RNU6-144P-201ENST00000383951 107 ntBASIC2.9□□□□□ -1.95
CCDC140Q96MF4 MIR554-201ENST00000384874 96 ntBASIC2.9□□□□□ -1.95
CCDC140Q96MF4 RNA5SP424-201ENST00000390988 115 ntBASIC2.9□□□□□ -1.95
CCDC140Q96MF4 RNU6-394P-201ENST00000410735 107 ntBASIC2.9□□□□□ -1.95
CCDC140Q96MF4 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.9□□□□□ -1.95
CCDC140Q96MF4 SCARNA8-201ENST00000515924 131 ntBASIC2.9□□□□□ -1.95
CCDC140Q96MF4 RN7SKP164-201ENST00000516138 266 ntBASIC2.9□□□□□ -1.95
CCDC140Q96MF4 RNU6-346P-201ENST00000516288 111 ntBASIC2.9□□□□□ -1.95
CCDC140Q96MF4 RNU6-1007P-201ENST00000516586 107 ntBASIC2.9□□□□□ -1.95
CCDC140Q96MF4 RNU6-1212P-201ENST00000517023 104 ntBASIC2.9□□□□□ -1.95
CCDC140Q96MF4 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.9□□□□□ -1.95
CCDC140Q96MF4 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2.9□□□□□ -1.95
CCDC140Q96MF4 MIR5685-201ENST00000579080 79 ntBASIC2.9□□□□□ -1.95
CCDC140Q96MF4 MIR4744-201ENST00000581563 82 ntBASIC2.9□□□□□ -1.95
CCDC140Q96MF4 AC006435.5-201ENST00000624486 112 ntBASIC2.9□□□□□ -1.95
CCDC140Q96MF4 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC2.9□□□□□ -1.95
CCDC140Q96MF4 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.9□□□□□ -1.95
CCDC140Q96MF4 CENPCP1-201ENST00000533085 2578 ntBASIC2.9□□□□□ -1.95
CCDC140Q96MF4 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
CCDC140Q96MF4 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC140Q96MF4 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC140Q96MF4 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC140Q96MF4 Y_RNA.357-201ENST00000365487 109 ntBASIC2.89□□□□□ -1.95
CCDC140Q96MF4 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
CCDC140Q96MF4 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC2.89□□□□□ -1.95
CCDC140Q96MF4 Y_RNA.398-201ENST00000383952 99 ntBASIC2.89□□□□□ -1.95
CCDC140Q96MF4 RNU6-125P-201ENST00000384505 107 ntBASIC2.89□□□□□ -1.95
CCDC140Q96MF4 MT-TT-201ENST00000387460 66 ntBASIC2.89□□□□□ -1.95
CCDC140Q96MF4 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
CCDC140Q96MF4 RNU5E-9P-201ENST00000411164 104 ntBASIC2.89□□□□□ -1.95
CCDC140Q96MF4 AL135786.1-201ENST00000415892 214 ntBASIC2.89□□□□□ -1.95
CCDC140Q96MF4 AL139247.1-201ENST00000422768 325 ntBASIC2.89□□□□□ -1.95
CCDC140Q96MF4 CR769767.1-201ENST00000436337 346 ntBASIC2.89□□□□□ -1.95
CCDC140Q96MF4 SEPT7P4-201ENST00000437076 306 ntBASIC2.89□□□□□ -1.95
CCDC140Q96MF4 UBBP3-201ENST00000445497 241 ntBASIC2.89□□□□□ -1.95
CCDC140Q96MF4 RN7SL93P-201ENST00000463035 293 ntBASIC2.89□□□□□ -1.95
CCDC140Q96MF4 AP001486.1-201ENST00000463339 476 ntBASIC2.89□□□□□ -1.95
CCDC140Q96MF4 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC2.89□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms