Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
ERCC4Q92889 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
ERCC4Q92889 RNU6-1175P-201ENST00000365200 107 ntBASIC3.16□□□□□ -1.9
ERCC4Q92889 SNORA9.2-201ENST00000365361 133 ntBASIC3.16□□□□□ -1.9
ERCC4Q92889 SNORA18.3-201ENST00000384122 132 ntBASIC3.16□□□□□ -1.9
ERCC4Q92889 Y_RNA.446-201ENST00000384178 104 ntBASIC3.16□□□□□ -1.9
ERCC4Q92889 MIR634-201ENST00000385208 97 ntBASIC3.16□□□□□ -1.9
ERCC4Q92889 MIR548I3-201ENST00000408378 149 ntBASIC3.16□□□□□ -1.9
ERCC4Q92889 MIR320B2-201ENST00000408479 138 ntBASIC3.16□□□□□ -1.9
ERCC4Q92889 MIR548I1-201ENST00000408810 149 ntBASIC3.16□□□□□ -1.9
ERCC4Q92889 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC3.16□□□□□ -1.9
ERCC4Q92889 SCGB1D5P-201ENST00000515134 247 ntBASIC3.16□□□□□ -1.9
ERCC4Q92889 RNU6-344P-201ENST00000516635 111 ntBASIC3.16□□□□□ -1.9
ERCC4Q92889 SCARNA24.2-201ENST00000516968 130 ntBASIC3.16□□□□□ -1.9
ERCC4Q92889 AC107016.2-201ENST00000547968 190 ntBASIC3.16□□□□□ -1.9
ERCC4Q92889 AC005176.2-201ENST00000596933 147 ntBASIC3.16□□□□□ -1.9
ERCC4Q92889 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
ERCC4Q92889 AC069528.2-201ENST00000624849 1991 ntBASIC3.16□□□□□ -1.9
ERCC4Q92889 ANKRD30BP1-201ENST00000451052 2186 ntBASIC3.15□□□□□ -1.9
ERCC4Q92889 Y_RNA.136-201ENST00000363444 102 ntBASIC3.15□□□□□ -1.91
ERCC4Q92889 Y_RNA.277-201ENST00000364754 102 ntBASIC3.15□□□□□ -1.91
ERCC4Q92889 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
ERCC4Q92889 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
ERCC4Q92889 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.15□□□□□ -1.91
ERCC4Q92889 RAB28P5-201ENST00000427490 651 ntBASIC3.15□□□□□ -1.91
ERCC4Q92889 UQCRBP2-201ENST00000447827 297 ntBASIC3.15□□□□□ -1.91
ERCC4Q92889 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.15□□□□□ -1.91
ERCC4Q92889 RN7SL297P-201ENST00000483161 293 ntBASIC3.15□□□□□ -1.91
ERCC4Q92889 RNU6-138P-201ENST00000515952 107 ntBASIC3.15□□□□□ -1.91
ERCC4Q92889 SCARNA17.1-201ENST00000516211 143 ntBASIC3.15□□□□□ -1.91
ERCC4Q92889 RNU4-71P-201ENST00000516258 113 ntBASIC3.15□□□□□ -1.91
ERCC4Q92889 SCARNA17.2-201ENST00000516334 143 ntBASIC3.15□□□□□ -1.91
ERCC4Q92889 RNU7-110P-201ENST00000516891 62 ntBASIC3.15□□□□□ -1.91
ERCC4Q92889 RNU2-31P-201ENST00000516954 155 ntBASIC3.15□□□□□ -1.91
ERCC4Q92889 SCARNA11.3-201ENST00000517276 130 ntBASIC3.15□□□□□ -1.91
ERCC4Q92889 AP002001.1-203ENST00000534002 267 ntBASIC3.15□□□□□ -1.91
ERCC4Q92889 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC3.15□□□□□ -1.91
ERCC4Q92889 SCARNA17.4-201ENST00000614296 143 ntBASIC3.15□□□□□ -1.91
ERCC4Q92889 TCL6_2.1-201ENST00000615162 119 ntBASIC3.15□□□□□ -1.91
ERCC4Q92889 AC005562.2-201ENST00000618264 111 ntBASIC3.15□□□□□ -1.91
ERCC4Q92889 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
ERCC4Q92889 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.15□□□□□ -1.91
ERCC4Q92889 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.15□□□□□ -1.91
ERCC4Q92889 RNU6-1083P-201ENST00000384022 107 ntBASIC3.14□□□□□ -1.91
ERCC4Q92889 Y_RNA.785-201ENST00000384290 109 ntBASIC3.14□□□□□ -1.91
ERCC4Q92889 RNU6-21P-201ENST00000384710 107 ntBASIC3.14□□□□□ -1.91
ERCC4Q92889 Y_RNA.569-201ENST00000384749 103 ntBASIC3.14□□□□□ -1.91
ERCC4Q92889 AL033519.2-201ENST00000403958 392 ntBASIC3.14□□□□□ -1.91
ERCC4Q92889 NDUFB4P4-201ENST00000404822 243 ntBASIC3.14□□□□□ -1.91
ERCC4Q92889 AL139156.1-201ENST00000412785 841 ntBASIC3.14□□□□□ -1.91
ERCC4Q92889 Z98742.2-201ENST00000431564 187 ntBASIC3.14□□□□□ -1.91
ERCC4Q92889 AL139109.1-201ENST00000455491 297 ntBASIC3.14□□□□□ -1.91
ERCC4Q92889 RNU6-625P-201ENST00000459412 107 ntBASIC3.14□□□□□ -1.91
ERCC4Q92889 RNU6-966P-201ENST00000516479 104 ntBASIC3.14□□□□□ -1.91
ERCC4Q92889 Y_RNA.700-201ENST00000516806 100 ntBASIC3.14□□□□□ -1.91
ERCC4Q92889 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
ERCC4Q92889 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
ERCC4Q92889 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC3.13□□□□□ -1.91
ERCC4Q92889 SNORD32B-201ENST00000364460 84 ntBASIC3.13□□□□□ -1.91
ERCC4Q92889 SNORA53-201ENST00000391141 249 ntBASIC3.13□□□□□ -1.91
ERCC4Q92889 RNA5SP504-201ENST00000410676 117 ntBASIC3.13□□□□□ -1.91
ERCC4Q92889 RNU6-1199P-201ENST00000411249 104 ntBASIC3.13□□□□□ -1.91
ERCC4Q92889 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC3.13□□□□□ -1.91
ERCC4Q92889 AC022018.1-201ENST00000430685 241 ntBASIC3.13□□□□□ -1.91
ERCC4Q92889 MICF-203ENST00000432679 129 ntBASIC3.13□□□□□ -1.91
ERCC4Q92889 AC009237.7-201ENST00000447357 229 ntBASIC3.13□□□□□ -1.91
ERCC4Q92889 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.13□□□□□ -1.91
ERCC4Q92889 AC130289.1-201ENST00000577321 73 ntBASIC3.13□□□□□ -1.91
ERCC4Q92889 AC103810.1-201ENST00000579873 453 ntBASIC3.13□□□□□ -1.91
ERCC4Q92889 ZNF861P-201ENST00000588126 639 ntBASIC3.13□□□□□ -1.91
ERCC4Q92889 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.13□□□□□ -1.91
ERCC4Q92889 AC008749.1-201ENST00000597650 306 ntBASIC3.13□□□□□ -1.91
ERCC4Q92889 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
ERCC4Q92889 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
ERCC4Q92889 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.12□□□□□ -1.91
ERCC4Q92889 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
ERCC4Q92889 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC3.12□□□□□ -1.91
ERCC4Q92889 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
ERCC4Q92889 snoU2_19.1-201ENST00000362361 80 ntBASIC3.12□□□□□ -1.91
ERCC4Q92889 Y_RNA.44-201ENST00000362676 108 ntBASIC3.12□□□□□ -1.91
ERCC4Q92889 RNU1-72P-201ENST00000362976 153 ntBASIC3.12□□□□□ -1.91
ERCC4Q92889 Y_RNA.101-201ENST00000363154 102 ntBASIC3.12□□□□□ -1.91
ERCC4Q92889 Y_RNA.269-201ENST00000364685 89 ntBASIC3.12□□□□□ -1.91
ERCC4Q92889 RNU6-1180P-201ENST00000364935 107 ntBASIC3.12□□□□□ -1.91
ERCC4Q92889 Y_RNA.418-201ENST00000384029 102 ntBASIC3.12□□□□□ -1.91
ERCC4Q92889 SNORA67.2-201ENST00000384300 149 ntBASIC3.12□□□□□ -1.91
ERCC4Q92889 RPL23AP36-201ENST00000413895 458 ntBASIC3.12□□□□□ -1.91
ERCC4Q92889 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC3.12□□□□□ -1.91
ERCC4Q92889 AL513477.1-202ENST00000417061 214 ntBASIC3.12□□□□□ -1.91
ERCC4Q92889 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.12□□□□□ -1.91
ERCC4Q92889 AC004386.2-201ENST00000441858 148 ntBASIC3.12□□□□□ -1.91
ERCC4Q92889 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.12□□□□□ -1.91
ERCC4Q92889 RNA5SP112-201ENST00000515937 99 ntBASIC3.12□□□□□ -1.91
ERCC4Q92889 SCARNA13-201ENST00000516672 275 ntBASIC3.12□□□□□ -1.91
ERCC4Q92889 SNORA31.15-201ENST00000516771 132 ntBASIC3.12□□□□□ -1.91
ERCC4Q92889 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
ERCC4Q92889 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC3.12□□□□□ -1.91
ERCC4Q92889 MIR4765-201ENST00000585007 77 ntBASIC3.12□□□□□ -1.91
ERCC4Q92889 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.12□□□□□ -1.91
ERCC4Q92889 FO624990.1-201ENST00000636373 85 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 211.3 ms