| TFE3 | P19532 | U2.3-201 | ENST00000617785 | 191 nt | BASIC | 3.45 | □□□□□ -1.86 | | |
| TFE3 | P19532 | U2.19-201 | ENST00000618602 | 191 nt | BASIC | 3.45 | □□□□□ -1.86 | | |
| TFE3 | P19532 | RNU2-1-201 | ENST00000618664 | 191 nt | BASIC | 3.45 | □□□□□ -1.86 | | |
| TFE3 | P19532 | U2.6-201 | ENST00000619225 | 191 nt | BASIC | 3.45 | □□□□□ -1.86 | | |
| TFE3 | P19532 | U2.5-201 | ENST00000619465 | 191 nt | BASIC | 3.45 | □□□□□ -1.86 | | |
| TFE3 | P19532 | U2.10-201 | ENST00000620268 | 191 nt | BASIC | 3.45 | □□□□□ -1.86 | | |
| TFE3 | P19532 | AC104971.4-201 | ENST00000622763 | 249 nt | TSL 5 BASIC | 3.45 | □□□□□ -1.86 | | |
| TFE3 | P19532 | AC058791.1-201 | ENST00000608412 | 3198 nt | BASIC | 3.45 | □□□□□ -1.86 | | |
| TFE3 | P19532 | PRKG2-206 | ENST00000545647 | 3852 nt | TSL 5 BASIC | 3.45 | □□□□□ -1.86 | | |
| TFE3 | P19532 | NEB-218 | ENST00000603639 | 25578 nt | APPRIS ALT2 TSL 5 BASIC | 3.45 | □□□□□ -1.86 | | |
| TFE3 | P19532 | NEB-219 | ENST00000604864 | 25578 nt | APPRIS ALT2 TSL 5 BASIC | 3.45 | □□□□□ -1.86 | | |
| TFE3 | P19532 | ERBIN-201 | ENST00000284037 | 8647 nt | TSL 1 (best) BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | UBE2W-203 | ENST00000517608 | 8426 nt | TSL 1 (best) BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | AL159152.1-201 | ENST00000635019 | 2587 nt | BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | ZNF626-204 | ENST00000612591 | 4404 nt | APPRIS P1 TSL 5 BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | RNU1-72P-201 | ENST00000362976 | 153 nt | BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | RNU6-944P-201 | ENST00000364023 | 107 nt | BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | SNORD31B-201 | ENST00000364977 | 69 nt | BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | RNU6-804P-201 | ENST00000384286 | 107 nt | BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | SNORA8.3-201 | ENST00000384679 | 139 nt | BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | MTCO2P33-201 | ENST00000402100 | 465 nt | BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | RNA5SP229-201 | ENST00000410809 | 99 nt | BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | AC068295.1-201 | ENST00000413056 | 153 nt | TSL 3 BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | AL451074.5-201 | ENST00000415894 | 435 nt | BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | TRBV25OR9-2-201 | ENST00000438417 | 374 nt | BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | TMSB4XP3-201 | ENST00000445144 | 114 nt | BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | AC003988.1-201 | ENST00000447198 | 578 nt | TSL 5 BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | AC006539.3-201 | ENST00000454258 | 129 nt | BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | RPL27AP5-201 | ENST00000469428 | 449 nt | BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | RNU7-200P-201 | ENST00000516105 | 62 nt | BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | RNU4ATAC17P-201 | ENST00000517272 | 120 nt | BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | AC012435.2-201 | ENST00000562869 | 361 nt | TSL 3 BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | AC025754.2-201 | ENST00000606491 | 432 nt | BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | AC104465.1-201 | ENST00000611365 | 139 nt | BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | snoZ196.1-201 | ENST00000625269 | 89 nt | BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | MIR7515-201 | ENST00000637837 | 67 nt | BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | FOXP2-206 | ENST00000393491 | 6085 nt | TSL 5 BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | AC009487.4-201 | ENST00000624969 | 3585 nt | BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | USP26-201 | ENST00000370832 | 3642 nt | APPRIS P1 BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | AL365440.2-201 | ENST00000419738 | 2597 nt | TSL 2 BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | ATP2C1-202 | ENST00000359644 | 3401 nt | APPRIS P3 TSL 1 (best) BASIC | 3.44 | □□□□□ -1.86 | | |
| TFE3 | P19532 | SEMG2-201 | ENST00000372769 | 2051 nt | APPRIS P1 TSL 1 (best) BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | ADGRG4-203 | ENST00000394143 | 9931 nt | APPRIS P2 TSL 1 (best) BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | CCDC148-202 | ENST00000409187 | 2523 nt | APPRIS P1 TSL 5 BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | C6orf10-201 | ENST00000375007 | 2125 nt | APPRIS ALT2 TSL 5 BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | PLPPR4-201 | ENST00000370184 | 4505 nt | TSL 5 BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | KIAA0586-215 | ENST00000619722 | 5597 nt | APPRIS ALT2 TSL 2 BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | PHF3-202 | ENST00000393387 | 6947 nt | APPRIS P1 TSL 1 (best) BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | Y_RNA.8-201 | ENST00000362353 | 102 nt | BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | Y_RNA.23-201 | ENST00000362496 | 106 nt | BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | Y_RNA.75-201 | ENST00000362927 | 97 nt | BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | RNU6-271P-201 | ENST00000363858 | 105 nt | BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | Y_RNA.293-201 | ENST00000364908 | 93 nt | BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | Y_RNA.310-201 | ENST00000365063 | 113 nt | BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | MIR873-201 | ENST00000401120 | 77 nt | BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | RNU6-1135P-201 | ENST00000411083 | 103 nt | BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | RPS27AP9-201 | ENST00000477681 | 438 nt | BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | RN7SKP164-201 | ENST00000516138 | 266 nt | BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | IGKV1-33-202 | ENST00000558152 | 324 nt | APPRIS ALT2 TSL 5 BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | AC105245.1-201 | ENST00000581934 | 244 nt | BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | AC069294.1-201 | ENST00000608397 | 350 nt | BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | AC099778.2-201 | ENST00000610904 | 211 nt | BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | IGKV1D-33-202 | ENST00000611734 | 324 nt | APPRIS ALT2 TSL 5 BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | ABCC9-206 | ENST00000621589 | 450 nt | TSL 5 BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | MTND1P7-201 | ENST00000632801 | 297 nt | BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | LINC01359-207 | ENST00000634799 | 487 nt | TSL 5 BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | EPS15-202 | ENST00000371730 | 4736 nt | APPRIS ALT2 TSL 1 (best) BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | NEB-201 | ENST00000172853 | 20634 nt | APPRIS ALT2 TSL 1 (best) BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | RASA1-202 | ENST00000456692 | 3776 nt | APPRIS ALT2 TSL 1 (best) BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | AC093010.3-201 | ENST00000570269 | 15214 nt | BASIC | 3.43 | □□□□□ -1.86 | | |
| TFE3 | P19532 | CCDC178-213 | ENST00000583930 | 3094 nt | APPRIS ALT2 TSL 1 (best) BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | AC103988.1-201 | ENST00000566382 | 2177 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | GLCE-202 | ENST00000559420 | 4840 nt | TSL 1 (best) BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | CPD-202 | ENST00000543464 | 4007 nt | TSL 2 BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | AC017071.1-201 | ENST00000564407 | 2204 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | NBPF20-201 | ENST00000369373 | 18760 nt | APPRIS ALT2 TSL 5 BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | SNORA63.1-201 | ENST00000362493 | 131 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | Y_RNA.182-201 | ENST00000363880 | 111 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | RNU6-975P-201 | ENST00000384296 | 105 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | SNORA19-201 | ENST00000384737 | 128 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | AL139095.1-201 | ENST00000404326 | 391 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | LINC02559-201 | ENST00000420391 | 188 nt | TSL 2 BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | AC005326.1-201 | ENST00000429197 | 123 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | PRSS3P4-201 | ENST00000453323 | 162 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | AC005840.1-201 | ENST00000498412 | 377 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | SNHG14-219 | ENST00000553134 | 470 nt | TSL 2 BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | MSMB-202 | ENST00000582163 | 488 nt | APPRIS P1 TSL 1 (best) BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | MIR3199-1-201 | ENST00000582434 | 88 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | uc_338.1-201 | ENST00000612113 | 180 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | MIR5739-201 | ENST00000619803 | 80 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | HMHB1-202 | ENST00000638299 | 126 nt | APPRIS P2 TSL 1 (best) BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | AC132825.6-201 | ENST00000638861 | 357 nt | BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | PTBP2-211 | ENST00000609116 | 12014 nt | APPRIS ALT1 TSL 1 (best) BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | TFEC-201 | ENST00000265440 | 6628 nt | TSL 1 (best) BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | PCAT4-201 | ENST00000504263 | 2091 nt | TSL 1 (best) BASIC | 3.42 | □□□□□ -1.86 | | |
| TFE3 | P19532 | TMEM232-201 | ENST00000455884 | 2501 nt | APPRIS P2 TSL 2 BASIC | 3.41 | □□□□□ -1.86 | | |
| TFE3 | P19532 | XRCC4-203 | ENST00000396027 | 1530 nt | APPRIS ALT1 TSL 5 BASIC | 3.41 | □□□□□ -1.86 | | |
| TFE3 | P19532 | AL021368.2-201 | ENST00000606125 | 5352 nt | BASIC | 3.41 | □□□□□ -1.86 | | |
| TFE3 | P19532 | SYNE2-212 | ENST00000554584 | 20508 nt | TSL 5 BASIC | 3.41 | □□□□□ -1.86 | | |
| TFE3 | P19532 | RNU6-103P-201 | ENST00000363686 | 107 nt | BASIC | 3.41 | □□□□□ -1.86 | | |