Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC6.78□□□□□ -1.32
MSH5O43196 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC6.78□□□□□ -1.32
MSH5O43196 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC6.77□□□□□ -1.32
MSH5O43196 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC6.77□□□□□ -1.33
MSH5O43196 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSH5O43196 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSH5O43196 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSH5O43196 RNU6-604P-201ENST00000390917 100 ntBASIC6.77□□□□□ -1.33
MSH5O43196 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
MSH5O43196 RNU7-53P-201ENST00000516705 60 ntBASIC6.77□□□□□ -1.33
MSH5O43196 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC6.77□□□□□ -1.33
MSH5O43196 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
MSH5O43196 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
MSH5O43196 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSH5O43196 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSH5O43196 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
MSH5O43196 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
MSH5O43196 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
MSH5O43196 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
MSH5O43196 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC6.77□□□□□ -1.33
MSH5O43196 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
MSH5O43196 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC6.76□□□□□ -1.33
MSH5O43196 AC104623.2-202ENST00000623477 4002 ntBASIC6.76□□□□□ -1.33
MSH5O43196 MIR1262-201ENST00000408276 93 ntBASIC6.76□□□□□ -1.33
MSH5O43196 AC023141.4-201ENST00000412031 328 ntBASIC6.76□□□□□ -1.33
MSH5O43196 AP002884.2-201ENST00000471647 395 ntBASIC6.76□□□□□ -1.33
MSH5O43196 MIR4691-201ENST00000583764 85 ntBASIC6.76□□□□□ -1.33
MSH5O43196 SNX18P1Y-201ENST00000616231 511 ntBASIC6.76□□□□□ -1.33
MSH5O43196 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC6.76□□□□□ -1.33
MSH5O43196 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC6.76□□□□□ -1.33
MSH5O43196 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC6.76□□□□□ -1.33
MSH5O43196 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC6.75□□□□□ -1.33
MSH5O43196 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
MSH5O43196 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC6.75□□□□□ -1.33
MSH5O43196 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC6.75□□□□□ -1.33
MSH5O43196 AL121839.2-201ENST00000565058 6943 ntBASIC6.75□□□□□ -1.33
MSH5O43196 SUPT16HP1-201ENST00000537175 3133 ntBASIC6.75□□□□□ -1.33
MSH5O43196 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC6.75□□□□□ -1.33
MSH5O43196 SALL4P2-201ENST00000423288 2910 ntBASIC6.75□□□□□ -1.33
MSH5O43196 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC6.75□□□□□ -1.33
MSH5O43196 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
MSH5O43196 SNORD56.6-201ENST00000384569 71 ntBASIC6.75□□□□□ -1.33
MSH5O43196 RNA5SP467-201ENST00000391274 118 ntBASIC6.75□□□□□ -1.33
MSH5O43196 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC6.75□□□□□ -1.33
MSH5O43196 RNU7-79P-201ENST00000516082 62 ntBASIC6.75□□□□□ -1.33
MSH5O43196 SCARNA20.4-201ENST00000516969 131 ntBASIC6.75□□□□□ -1.33
MSH5O43196 TRAV8-5-201ENST00000537369 341 ntBASIC6.75□□□□□ -1.33
MSH5O43196 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
MSH5O43196 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
MSH5O43196 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC6.74□□□□□ -1.33
MSH5O43196 RNU7-67P-201ENST00000459003 62 ntBASIC6.74□□□□□ -1.33
MSH5O43196 RN7SL188P-201ENST00000469842 285 ntBASIC6.74□□□□□ -1.33
MSH5O43196 AC140172.1-201ENST00000502928 141 ntBASIC6.74□□□□□ -1.33
MSH5O43196 RNU6-75P-201ENST00000515944 104 ntBASIC6.74□□□□□ -1.33
MSH5O43196 RN7SKP260-201ENST00000516907 149 ntBASIC6.74□□□□□ -1.33
MSH5O43196 SNORA74.3-201ENST00000517108 154 ntBASIC6.74□□□□□ -1.33
MSH5O43196 ASB8-204ENST00000536071 568 ntTSL 4 BASIC6.74□□□□□ -1.33
MSH5O43196 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
MSH5O43196 MIR4284-201ENST00000578924 81 ntBASIC6.74□□□□□ -1.33
MSH5O43196 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
MSH5O43196 MFSD8-242ENST00000641690 4199 ntBASIC6.74□□□□□ -1.33
MSH5O43196 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
MSH5O43196 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSH5O43196 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSH5O43196 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSH5O43196 MIRLET7F1-201ENST00000362202 87 ntBASIC6.73□□□□□ -1.33
MSH5O43196 SNORA70.2-201ENST00000364506 135 ntBASIC6.73□□□□□ -1.33
MSH5O43196 RPL7AP28-201ENST00000464513 571 ntBASIC6.73□□□□□ -1.33
MSH5O43196 MIR4737-201ENST00000583979 81 ntBASIC6.73□□□□□ -1.33
MSH5O43196 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
MSH5O43196 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSH5O43196 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
MSH5O43196 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSH5O43196 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
MSH5O43196 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSH5O43196 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSH5O43196 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSH5O43196 RNU6-1312P-201ENST00000362425 108 ntBASIC6.72□□□□□ -1.33
MSH5O43196 RNU6-1335P-201ENST00000365426 107 ntBASIC6.72□□□□□ -1.33
MSH5O43196 SNORA70.7-201ENST00000384159 133 ntBASIC6.72□□□□□ -1.33
MSH5O43196 RNU6-424P-201ENST00000384367 105 ntBASIC6.72□□□□□ -1.33
MSH5O43196 RN7SL817P-201ENST00000480777 288 ntBASIC6.72□□□□□ -1.33
MSH5O43196 RPS29P11-201ENST00000496507 171 ntBASIC6.72□□□□□ -1.33
MSH5O43196 SNORA4.4-201ENST00000515921 135 ntBASIC6.72□□□□□ -1.33
MSH5O43196 AL110118.1-201ENST00000553543 400 ntBASIC6.72□□□□□ -1.33
MSH5O43196 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
MSH5O43196 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
MSH5O43196 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC6.71□□□□□ -1.33
MSH5O43196 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC6.71□□□□□ -1.33
MSH5O43196 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.34
MSH5O43196 RNA5SP307-201ENST00000362863 116 ntBASIC6.71□□□□□ -1.34
MSH5O43196 ATP6V0E1P3-201ENST00000420036 246 ntBASIC6.71□□□□□ -1.34
MSH5O43196 HSPE1P5-201ENST00000561489 272 ntBASIC6.71□□□□□ -1.34
MSH5O43196 AP000753.3-201ENST00000604083 169 ntBASIC6.71□□□□□ -1.34
MSH5O43196 AC073308.1-201ENST00000623696 305 ntBASIC6.71□□□□□ -1.34
MSH5O43196 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
MSH5O43196 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
MSH5O43196 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC6.71□□□□□ -1.34
MSH5O43196 MED23-203ENST00000368058 4576 ntTSL 5 BASIC6.71□□□□□ -1.34
MSH5O43196 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC6.7□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 104.8 ms