Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
USP3Q9Y6I4 MIR1294-201ENST00000408503 142 ntBASIC3.91□□□□□ -1.78
USP3Q9Y6I4 AC006445.1-201ENST00000491925 405 ntBASIC3.91□□□□□ -1.78
USP3Q9Y6I4 RNU5E-3P-201ENST00000515913 68 ntBASIC3.91□□□□□ -1.78
USP3Q9Y6I4 MIR3121-201ENST00000579680 77 ntBASIC3.91□□□□□ -1.78
USP3Q9Y6I4 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.91□□□□□ -1.78
USP3Q9Y6I4 AC244505.7-201ENST00000599675 272 ntBASIC3.91□□□□□ -1.78
USP3Q9Y6I4 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.91□□□□□ -1.78
USP3Q9Y6I4 AC006111.3-201ENST00000622137 383 ntBASIC3.91□□□□□ -1.78
USP3Q9Y6I4 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
USP3Q9Y6I4 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
USP3Q9Y6I4 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
USP3Q9Y6I4 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
USP3Q9Y6I4 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.78
USP3Q9Y6I4 AC007256.1-201ENST00000392253 2765 ntBASIC3.9□□□□□ -1.78
USP3Q9Y6I4 RNU1-18P-201ENST00000363062 164 ntBASIC3.9□□□□□ -1.79
USP3Q9Y6I4 RNU1-105P-201ENST00000363470 161 ntBASIC3.9□□□□□ -1.79
USP3Q9Y6I4 SNORA73.2-201ENST00000364946 201 ntBASIC3.9□□□□□ -1.79
USP3Q9Y6I4 RNU6-975P-201ENST00000384296 105 ntBASIC3.9□□□□□ -1.79
USP3Q9Y6I4 Y_RNA.587-201ENST00000391210 103 ntBASIC3.9□□□□□ -1.79
USP3Q9Y6I4 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC3.9□□□□□ -1.79
USP3Q9Y6I4 RN7SL93P-201ENST00000463035 293 ntBASIC3.9□□□□□ -1.79
USP3Q9Y6I4 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC3.9□□□□□ -1.79
USP3Q9Y6I4 RNU6-772P-201ENST00000516042 105 ntBASIC3.9□□□□□ -1.79
USP3Q9Y6I4 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.9□□□□□ -1.79
USP3Q9Y6I4 RNU6-1299P-201ENST00000516316 100 ntBASIC3.9□□□□□ -1.79
USP3Q9Y6I4 RNA5SP153-201ENST00000516498 76 ntBASIC3.9□□□□□ -1.79
USP3Q9Y6I4 RNA5SP143-201ENST00000516936 115 ntBASIC3.9□□□□□ -1.79
USP3Q9Y6I4 MIR2681-201ENST00000581814 105 ntBASIC3.9□□□□□ -1.79
USP3Q9Y6I4 RPL30P11-203ENST00000598995 310 ntBASIC3.9□□□□□ -1.79
USP3Q9Y6I4 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
USP3Q9Y6I4 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
USP3Q9Y6I4 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.9□□□□□ -1.79
USP3Q9Y6I4 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.89□□□□□ -1.79
USP3Q9Y6I4 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
USP3Q9Y6I4 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.89□□□□□ -1.79
USP3Q9Y6I4 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
USP3Q9Y6I4 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
USP3Q9Y6I4 RNU6-978P-201ENST00000364371 103 ntBASIC3.89□□□□□ -1.79
USP3Q9Y6I4 RNA5SP51-201ENST00000364750 119 ntBASIC3.89□□□□□ -1.79
USP3Q9Y6I4 SNORA26-201ENST00000391286 122 ntBASIC3.89□□□□□ -1.79
USP3Q9Y6I4 PTMAP2-201ENST00000397627 327 ntBASIC3.89□□□□□ -1.79
USP3Q9Y6I4 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.89□□□□□ -1.79
USP3Q9Y6I4 RN7SKP27-201ENST00000410684 333 ntBASIC3.89□□□□□ -1.79
USP3Q9Y6I4 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.89□□□□□ -1.79
USP3Q9Y6I4 AL035423.1-201ENST00000420331 213 ntBASIC3.89□□□□□ -1.79
USP3Q9Y6I4 AC023449.1-201ENST00000454464 154 ntBASIC3.89□□□□□ -1.79
USP3Q9Y6I4 SNORD65B-201ENST00000459126 73 ntBASIC3.89□□□□□ -1.79
USP3Q9Y6I4 AC083906.5-201ENST00000503722 328 ntBASIC3.89□□□□□ -1.79
USP3Q9Y6I4 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.89□□□□□ -1.79
USP3Q9Y6I4 MTND5P34-201ENST00000568888 325 ntBASIC3.89□□□□□ -1.79
USP3Q9Y6I4 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC3.89□□□□□ -1.79
USP3Q9Y6I4 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
USP3Q9Y6I4 ADGRL2-211ENST00000370730 6173 ntTSL 5 BASIC3.89□□□□□ -1.79
USP3Q9Y6I4 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
USP3Q9Y6I4 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
USP3Q9Y6I4 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.88□□□□□ -1.79
USP3Q9Y6I4 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
USP3Q9Y6I4 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.88□□□□□ -1.79
USP3Q9Y6I4 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.88□□□□□ -1.79
USP3Q9Y6I4 Y_RNA.280-201ENST00000364765 112 ntBASIC3.88□□□□□ -1.79
USP3Q9Y6I4 SNORA5A-201ENST00000384111 134 ntBASIC3.88□□□□□ -1.79
USP3Q9Y6I4 AC008134.1-201ENST00000420943 193 ntBASIC3.88□□□□□ -1.79
USP3Q9Y6I4 AL158147.1-201ENST00000443970 75 ntBASIC3.88□□□□□ -1.79
USP3Q9Y6I4 RPL39P40-201ENST00000445481 146 ntBASIC3.88□□□□□ -1.79
USP3Q9Y6I4 RNU7-14P-201ENST00000459331 62 ntBASIC3.88□□□□□ -1.79
USP3Q9Y6I4 RNA5SP112-201ENST00000515937 99 ntBASIC3.88□□□□□ -1.79
USP3Q9Y6I4 RNA5SP20-201ENST00000515976 84 ntBASIC3.88□□□□□ -1.79
USP3Q9Y6I4 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.88□□□□□ -1.79
USP3Q9Y6I4 MIR1254-2-201ENST00000579553 63 ntBASIC3.88□□□□□ -1.79
USP3Q9Y6I4 MIR4444-1-201ENST00000581696 74 ntBASIC3.88□□□□□ -1.79
USP3Q9Y6I4 MIR4444-2-201ENST00000584390 74 ntBASIC3.88□□□□□ -1.79
USP3Q9Y6I4 5S_rRNA.13-201ENST00000622298 123 ntBASIC3.88□□□□□ -1.79
USP3Q9Y6I4 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.88□□□□□ -1.79
USP3Q9Y6I4 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
USP3Q9Y6I4 TENM1-201ENST00000371130 12875 ntAPPRIS P3 TSL 1 (best) BASIC3.88□□□□□ -1.79
USP3Q9Y6I4 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
USP3Q9Y6I4 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.88□□□□□ -1.79
USP3Q9Y6I4 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
USP3Q9Y6I4 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
USP3Q9Y6I4 RNY1P11-201ENST00000363759 113 ntBASIC3.87□□□□□ -1.79
USP3Q9Y6I4 Y_RNA.309-201ENST00000365046 111 ntBASIC3.87□□□□□ -1.79
USP3Q9Y6I4 RNU6-484P-201ENST00000384016 107 ntBASIC3.87□□□□□ -1.79
USP3Q9Y6I4 RNU6-136P-201ENST00000384663 107 ntBASIC3.87□□□□□ -1.79
USP3Q9Y6I4 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
USP3Q9Y6I4 ATP5A1P2-201ENST00000412323 255 ntBASIC3.87□□□□□ -1.79
USP3Q9Y6I4 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
USP3Q9Y6I4 RPL21P129-201ENST00000491732 478 ntBASIC3.87□□□□□ -1.79
USP3Q9Y6I4 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.87□□□□□ -1.79
USP3Q9Y6I4 RN7SKP209-201ENST00000516888 304 ntBASIC3.87□□□□□ -1.79
USP3Q9Y6I4 MIR4679-2-201ENST00000578358 77 ntBASIC3.87□□□□□ -1.79
USP3Q9Y6I4 AC131055.1-201ENST00000584626 316 ntBASIC3.87□□□□□ -1.79
USP3Q9Y6I4 AL031274.2-201ENST00000599419 203 ntBASIC3.87□□□□□ -1.79
USP3Q9Y6I4 AP000553.6-201ENST00000641242 118 ntBASIC3.87□□□□□ -1.79
USP3Q9Y6I4 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
USP3Q9Y6I4 FAM35DP-201ENST00000323387 2712 ntBASIC3.87□□□□□ -1.79
USP3Q9Y6I4 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
USP3Q9Y6I4 AC138915.1-201ENST00000565427 1685 ntBASIC3.87□□□□□ -1.79
USP3Q9Y6I4 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
USP3Q9Y6I4 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 126.3 ms