Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC4.35□□□□□ -1.71
SH3RF1Q7Z6J0 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SH3RF1Q7Z6J0 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC4.35□□□□□ -1.71
SH3RF1Q7Z6J0 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SH3RF1Q7Z6J0 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC4.34□□□□□ -1.71
SH3RF1Q7Z6J0 MTTP-201ENST00000265517 4037 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
SH3RF1Q7Z6J0 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.34□□□□□ -1.71
SH3RF1Q7Z6J0 RNU1-18P-201ENST00000363062 164 ntBASIC4.34□□□□□ -1.71
SH3RF1Q7Z6J0 RNU4-41P-201ENST00000364426 143 ntBASIC4.34□□□□□ -1.71
SH3RF1Q7Z6J0 RNA5SP97-201ENST00000365006 84 ntBASIC4.34□□□□□ -1.71
SH3RF1Q7Z6J0 RNU6-1323P-201ENST00000384025 107 ntBASIC4.34□□□□□ -1.71
SH3RF1Q7Z6J0 RNU6-49P-201ENST00000384256 107 ntBASIC4.34□□□□□ -1.71
SH3RF1Q7Z6J0 MIRLET7F2-201ENST00000385277 83 ntBASIC4.34□□□□□ -1.71
SH3RF1Q7Z6J0 SNORD72-201ENST00000390994 80 ntBASIC4.34□□□□□ -1.71
SH3RF1Q7Z6J0 AC245291.1-201ENST00000419501 328 ntBASIC4.34□□□□□ -1.71
SH3RF1Q7Z6J0 ATP6V0E1P4-201ENST00000427294 242 ntBASIC4.34□□□□□ -1.71
SH3RF1Q7Z6J0 RNU6-1337P-201ENST00000516525 95 ntBASIC4.34□□□□□ -1.71
SH3RF1Q7Z6J0 Y_RNA.685-201ENST00000516532 108 ntBASIC4.34□□□□□ -1.71
SH3RF1Q7Z6J0 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC4.34□□□□□ -1.71
SH3RF1Q7Z6J0 AL110115.1-201ENST00000614396 364 ntBASIC4.34□□□□□ -1.71
SH3RF1Q7Z6J0 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC4.34□□□□□ -1.72
SH3RF1Q7Z6J0 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 Y_RNA.124-201ENST00000363339 93 ntBASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 RNU6-271P-201ENST00000363858 105 ntBASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 RNU6-1131P-201ENST00000364955 107 ntBASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 RNU6-1336P-201ENST00000383886 109 ntBASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 MIR548A1-201ENST00000385041 97 ntBASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 SNORA48.2-201ENST00000390926 124 ntBASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 MIR1185-2-201ENST00000408687 86 ntBASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 RNU6-554P-201ENST00000410466 106 ntBASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 RNU2-55P-201ENST00000411146 174 ntBASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 AC115115.1-201ENST00000449927 248 ntBASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 CYCSP35-201ENST00000451978 304 ntBASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 RBMY2UP-201ENST00000453474 324 ntBASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 Y_RNA.649-201ENST00000459077 103 ntBASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 AC020914.4-201ENST00000597690 277 ntBASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 AL137843.1-201ENST00000605078 385 ntBASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.33□□□□□ -1.72
SH3RF1Q7Z6J0 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 RNU6-136P-201ENST00000384663 107 ntBASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 MLLT10P1-201ENST00000418346 262 ntBASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 RPS26P45-201ENST00000471748 340 ntBASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 TRBV12-2-201ENST00000489763 344 ntBASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 RN7SKP57-201ENST00000517248 293 ntBASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 AC091178.2-201ENST00000584401 117 ntBASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 AC131055.1-201ENST00000584626 316 ntBASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 AC005972.2-201ENST00000604690 348 ntBASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 AP001318.4-201ENST00000616637 121 ntBASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 Xist_exon1.1-201ENST00000618930 85 ntBASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 AC025521.1-201ENST00000621624 286 ntBASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 MIR1245B-201ENST00000636115 69 ntBASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 AC007256.1-201ENST00000392253 2765 ntBASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 AC006504.1-201ENST00000562493 3666 ntBASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC4.32□□□□□ -1.72
SH3RF1Q7Z6J0 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SH3RF1Q7Z6J0 RNU6-647P-201ENST00000364243 107 ntBASIC4.31□□□□□ -1.72
SH3RF1Q7Z6J0 RNA5SP51-201ENST00000364750 119 ntBASIC4.31□□□□□ -1.72
SH3RF1Q7Z6J0 RNA5SP173-201ENST00000364857 136 ntBASIC4.31□□□□□ -1.72
SH3RF1Q7Z6J0 MIR490-201ENST00000384865 128 ntBASIC4.31□□□□□ -1.72
SH3RF1Q7Z6J0 U6atac.2-201ENST00000408644 118 ntBASIC4.31□□□□□ -1.72
SH3RF1Q7Z6J0 AC023141.4-201ENST00000412031 328 ntBASIC4.31□□□□□ -1.72
SH3RF1Q7Z6J0 AL121890.1-201ENST00000435457 205 ntBASIC4.31□□□□□ -1.72
SH3RF1Q7Z6J0 SNORA71B-202ENST00000439232 272 ntBASIC4.31□□□□□ -1.72
SH3RF1Q7Z6J0 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC4.31□□□□□ -1.72
SH3RF1Q7Z6J0 RPL36AP21-201ENST00000490372 323 ntBASIC4.31□□□□□ -1.72
SH3RF1Q7Z6J0 RAC1P2-201ENST00000511164 579 ntBASIC4.31□□□□□ -1.72
SH3RF1Q7Z6J0 RNU6-1299P-201ENST00000516316 100 ntBASIC4.31□□□□□ -1.72
SH3RF1Q7Z6J0 AL137849.1-201ENST00000604767 169 ntBASIC4.31□□□□□ -1.72
SH3RF1Q7Z6J0 AC062037.1-201ENST00000605302 128 ntBASIC4.31□□□□□ -1.72
SH3RF1Q7Z6J0 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
SH3RF1Q7Z6J0 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
SH3RF1Q7Z6J0 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
SH3RF1Q7Z6J0 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.31□□□□□ -1.72
SH3RF1Q7Z6J0 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC4.31□□□□□ -1.72
SH3RF1Q7Z6J0 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.31□□□□□ -1.72
SH3RF1Q7Z6J0 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC4.3□□□□□ -1.72
SH3RF1Q7Z6J0 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SH3RF1Q7Z6J0 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC4.3□□□□□ -1.72
SH3RF1Q7Z6J0 RC3H2-203ENST00000373670 9248 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
SH3RF1Q7Z6J0 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
SH3RF1Q7Z6J0 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.3□□□□□ -1.72
SH3RF1Q7Z6J0 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.3□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 100.6 ms