Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 RPL23AP83-201ENST00000434984 473 ntBASIC3.66□□□□□ -1.82
SOX4Q06945 Z75741.1-201ENST00000446793 314 ntBASIC3.66□□□□□ -1.82
SOX4Q06945 AL441985.1-201ENST00000457727 251 ntBASIC3.66□□□□□ -1.82
SOX4Q06945 AC145146.1-201ENST00000496370 254 ntBASIC3.66□□□□□ -1.82
SOX4Q06945 FCF1P8-201ENST00000510322 597 ntBASIC3.66□□□□□ -1.82
SOX4Q06945 RNU6-561P-201ENST00000516222 102 ntBASIC3.66□□□□□ -1.82
SOX4Q06945 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.66□□□□□ -1.82
SOX4Q06945 HSPE1P7-201ENST00000604681 321 ntBASIC3.66□□□□□ -1.82
SOX4Q06945 AL137843.1-201ENST00000605078 385 ntBASIC3.66□□□□□ -1.82
SOX4Q06945 MIR6844-201ENST00000637122 62 ntBASIC3.66□□□□□ -1.82
SOX4Q06945 AL672296.1-201ENST00000427780 2158 ntBASIC3.66□□□□□ -1.82
SOX4Q06945 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.65□□□□□ -1.82
SOX4Q06945 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.82
SOX4Q06945 SNORD114-19-201ENST00000363072 75 ntBASIC3.65□□□□□ -1.83
SOX4Q06945 U3.8-201ENST00000363675 217 ntBASIC3.65□□□□□ -1.83
SOX4Q06945 Y_RNA.361-201ENST00000365515 120 ntBASIC3.65□□□□□ -1.83
SOX4Q06945 MIR491-201ENST00000384877 84 ntBASIC3.65□□□□□ -1.83
SOX4Q06945 SNORA48.5-201ENST00000391143 135 ntBASIC3.65□□□□□ -1.83
SOX4Q06945 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.65□□□□□ -1.83
SOX4Q06945 AL714022.1-201ENST00000439897 151 ntBASIC3.65□□□□□ -1.83
SOX4Q06945 AC115115.1-201ENST00000449927 248 ntBASIC3.65□□□□□ -1.83
SOX4Q06945 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.65□□□□□ -1.83
SOX4Q06945 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC3.65□□□□□ -1.83
SOX4Q06945 MIR3646-201ENST00000578301 84 ntBASIC3.65□□□□□ -1.83
SOX4Q06945 MIR4724-201ENST00000579485 89 ntBASIC3.65□□□□□ -1.83
SOX4Q06945 MIR5195-201ENST00000583555 115 ntBASIC3.65□□□□□ -1.83
SOX4Q06945 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.65□□□□□ -1.83
SOX4Q06945 AL136164.4-201ENST00000625013 2135 ntBASIC3.65□□□□□ -1.83
SOX4Q06945 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
SOX4Q06945 TNPO1P3-201ENST00000436471 2662 ntBASIC3.65□□□□□ -1.83
SOX4Q06945 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.65□□□□□ -1.83
SOX4Q06945 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
SOX4Q06945 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
SOX4Q06945 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
SOX4Q06945 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.64□□□□□ -1.83
SOX4Q06945 RNU6-144P-201ENST00000383951 107 ntBASIC3.64□□□□□ -1.83
SOX4Q06945 RNU6-768P-201ENST00000384683 107 ntBASIC3.64□□□□□ -1.83
SOX4Q06945 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.64□□□□□ -1.83
SOX4Q06945 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC3.64□□□□□ -1.83
SOX4Q06945 AL159169.1-201ENST00000421119 127 ntBASIC3.64□□□□□ -1.83
SOX4Q06945 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC3.64□□□□□ -1.83
SOX4Q06945 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.64□□□□□ -1.83
SOX4Q06945 RPS29P31-201ENST00000446147 164 ntBASIC3.64□□□□□ -1.83
SOX4Q06945 RNU2-56P-201ENST00000516826 190 ntBASIC3.64□□□□□ -1.83
SOX4Q06945 SNORA70.24-201ENST00000517233 118 ntBASIC3.64□□□□□ -1.83
SOX4Q06945 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC3.64□□□□□ -1.83
SOX4Q06945 MIR4738-201ENST00000579134 87 ntBASIC3.64□□□□□ -1.83
SOX4Q06945 MIR4276-201ENST00000584832 70 ntBASIC3.64□□□□□ -1.83
SOX4Q06945 AC099778.2-201ENST00000610904 211 ntBASIC3.64□□□□□ -1.83
SOX4Q06945 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.64□□□□□ -1.83
SOX4Q06945 AP001340.1-201ENST00000624405 217 ntBASIC3.64□□□□□ -1.83
SOX4Q06945 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
SOX4Q06945 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
SOX4Q06945 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.64□□□□□ -1.83
SOX4Q06945 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
SOX4Q06945 RNU6-1180P-201ENST00000364935 107 ntBASIC3.63□□□□□ -1.83
SOX4Q06945 RNU6-728P-201ENST00000365375 104 ntBASIC3.63□□□□□ -1.83
SOX4Q06945 Y_RNA.521-201ENST00000384560 114 ntBASIC3.63□□□□□ -1.83
SOX4Q06945 Y_RNA.563-201ENST00000384707 108 ntBASIC3.63□□□□□ -1.83
SOX4Q06945 MIR548B-201ENST00000385247 97 ntBASIC3.63□□□□□ -1.83
SOX4Q06945 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.63□□□□□ -1.83
SOX4Q06945 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.63□□□□□ -1.83
SOX4Q06945 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.63□□□□□ -1.83
SOX4Q06945 AL357552.1-201ENST00000445254 415 ntBASIC3.63□□□□□ -1.83
SOX4Q06945 RPS3P1-201ENST00000456781 192 ntBASIC3.63□□□□□ -1.83
SOX4Q06945 YWHAEP4-201ENST00000505390 198 ntBASIC3.63□□□□□ -1.83
SOX4Q06945 SNORA70.12-201ENST00000516084 153 ntBASIC3.63□□□□□ -1.83
SOX4Q06945 RNU1-61P-201ENST00000516107 151 ntBASIC3.63□□□□□ -1.83
SOX4Q06945 AP001328.1-201ENST00000528550 176 ntBASIC3.63□□□□□ -1.83
SOX4Q06945 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC3.63□□□□□ -1.83
SOX4Q06945 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.63□□□□□ -1.83
SOX4Q06945 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC3.63□□□□□ -1.83
SOX4Q06945 YPEL5P2-201ENST00000605553 359 ntBASIC3.63□□□□□ -1.83
SOX4Q06945 AC025754.2-201ENST00000606491 432 ntBASIC3.63□□□□□ -1.83
SOX4Q06945 AC012640.5-201ENST00000623897 319 ntBASIC3.63□□□□□ -1.83
SOX4Q06945 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.63□□□□□ -1.83
SOX4Q06945 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.63□□□□□ -1.83
SOX4Q06945 AC007496.3-201ENST00000624987 3443 ntBASIC3.63□□□□□ -1.83
SOX4Q06945 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
SOX4Q06945 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.62□□□□□ -1.83
SOX4Q06945 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.62□□□□□ -1.83
SOX4Q06945 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
SOX4Q06945 MIR367-201ENST00000362299 68 ntBASIC3.62□□□□□ -1.83
SOX4Q06945 RNU6-588P-201ENST00000410281 105 ntBASIC3.62□□□□□ -1.83
SOX4Q06945 RNU2-49P-201ENST00000410666 184 ntBASIC3.62□□□□□ -1.83
SOX4Q06945 RHEBP3-201ENST00000411920 351 ntBASIC3.62□□□□□ -1.83
SOX4Q06945 AC245291.1-201ENST00000419501 328 ntBASIC3.62□□□□□ -1.83
SOX4Q06945 AL139281.1-201ENST00000422120 335 ntBASIC3.62□□□□□ -1.83
SOX4Q06945 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC3.62□□□□□ -1.83
SOX4Q06945 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.62□□□□□ -1.83
SOX4Q06945 RPS27P1-201ENST00000450552 247 ntBASIC3.62□□□□□ -1.83
SOX4Q06945 RPL32P34-201ENST00000486380 400 ntBASIC3.62□□□□□ -1.83
SOX4Q06945 SNORA74D-201ENST00000516404 141 ntBASIC3.62□□□□□ -1.83
SOX4Q06945 RN7SKP57-201ENST00000517248 293 ntBASIC3.62□□□□□ -1.83
SOX4Q06945 HSPE1P18-201ENST00000517602 280 ntBASIC3.62□□□□□ -1.83
SOX4Q06945 AC012493.2-201ENST00000595083 291 ntBASIC3.62□□□□□ -1.83
SOX4Q06945 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.62□□□□□ -1.83
SOX4Q06945 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC3.62□□□□□ -1.83
SOX4Q06945 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.62□□□□□ -1.83
SOX4Q06945 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.62□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms