Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AC008134.1-201ENST00000420943 193 ntBASIC0.07□□□□□ -2.4
HMGB3O15347 MTND1P20-201ENST00000430341 950 ntBASIC0.07□□□□□ -2.4
HMGB3O15347 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC0.07□□□□□ -2.4
HMGB3O15347 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.07□□□□□ -2.4
HMGB3O15347 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC0.07□□□□□ -2.4
HMGB3O15347 OR9P1P-201ENST00000496431 281 ntBASIC0.07□□□□□ -2.4
HMGB3O15347 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC0.07□□□□□ -2.4
HMGB3O15347 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.07□□□□□ -2.4
HMGB3O15347 AP003716.2-201ENST00000528260 108 ntBASIC0.07□□□□□ -2.4
HMGB3O15347 AC023827.1-201ENST00000569247 97 ntBASIC0.07□□□□□ -2.4
HMGB3O15347 AL121992.2-201ENST00000606262 256 ntBASIC0.07□□□□□ -2.4
HMGB3O15347 SNORA28-201ENST00000606769 126 ntBASIC0.07□□□□□ -2.4
HMGB3O15347 SEPT14P17-201ENST00000617978 177 ntBASIC0.07□□□□□ -2.4
HMGB3O15347 AC138649.3-201ENST00000622154 254 ntBASIC0.07□□□□□ -2.4
HMGB3O15347 AL078595.3-201ENST00000623815 1166 ntBASIC0.07□□□□□ -2.4
HMGB3O15347 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.06□□□□□ -2.4
HMGB3O15347 RNU6-1305P-201ENST00000364353 104 ntBASIC0.06□□□□□ -2.4
HMGB3O15347 RNU6-827P-201ENST00000365553 106 ntBASIC0.06□□□□□ -2.4
HMGB3O15347 SNORA67.2-201ENST00000384300 149 ntBASIC0.06□□□□□ -2.4
HMGB3O15347 MIR140-201ENST00000385282 100 ntBASIC0.06□□□□□ -2.4
HMGB3O15347 RNU6-550P-201ENST00000391057 101 ntBASIC0.06□□□□□ -2.4
HMGB3O15347 RNU6-177P-201ENST00000411257 104 ntBASIC0.06□□□□□ -2.4
HMGB3O15347 RNU6-221P-201ENST00000459541 99 ntBASIC0.06□□□□□ -2.4
HMGB3O15347 MTCO2P6-201ENST00000463134 685 ntBASIC0.06□□□□□ -2.4
HMGB3O15347 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.06□□□□□ -2.4
HMGB3O15347 MTND4LP18-201ENST00000526864 291 ntBASIC0.06□□□□□ -2.4
HMGB3O15347 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.06□□□□□ -2.4
HMGB3O15347 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.06□□□□□ -2.4
HMGB3O15347 AL136317.1-201ENST00000612653 226 ntBASIC0.06□□□□□ -2.4
HMGB3O15347 MIR6715A-201ENST00000615929 79 ntBASIC0.06□□□□□ -2.4
HMGB3O15347 AC104010.1-201ENST00000616889 150 ntBASIC0.06□□□□□ -2.4
HMGB3O15347 snoZ196.1-201ENST00000625269 89 ntBASIC0.06□□□□□ -2.4
HMGB3O15347 Y_RNA.330-201ENST00000365230 109 ntBASIC0.05□□□□□ -2.4
HMGB3O15347 RNU6-793P-201ENST00000384233 104 ntBASIC0.05□□□□□ -2.4
HMGB3O15347 AC106883.1-201ENST00000418805 562 ntBASIC0.05□□□□□ -2.4
HMGB3O15347 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC0.05□□□□□ -2.4
HMGB3O15347 AL031274.1-201ENST00000450334 232 ntBASIC0.05□□□□□ -2.4
HMGB3O15347 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC0.05□□□□□ -2.4
HMGB3O15347 TPT1P7-201ENST00000458300 517 ntBASIC0.05□□□□□ -2.4
HMGB3O15347 snoU13.6-201ENST00000458785 104 ntBASIC0.05□□□□□ -2.4
HMGB3O15347 RNU7-94P-201ENST00000459576 63 ntBASIC0.05□□□□□ -2.4
HMGB3O15347 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC0.05□□□□□ -2.4
HMGB3O15347 HSPE1P23-201ENST00000509838 286 ntBASIC0.05□□□□□ -2.4
HMGB3O15347 RNU7-99P-201ENST00000516271 62 ntBASIC0.05□□□□□ -2.4
HMGB3O15347 RNU6-1178P-201ENST00000516674 107 ntBASIC0.05□□□□□ -2.4
HMGB3O15347 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC0.05□□□□□ -2.4
HMGB3O15347 MIR5000-201ENST00000577717 103 ntBASIC0.05□□□□□ -2.4
HMGB3O15347 MIR4769-201ENST00000584126 77 ntBASIC0.05□□□□□ -2.4
HMGB3O15347 MIR3192-201ENST00000584920 77 ntBASIC0.05□□□□□ -2.4
HMGB3O15347 AC234772.3-201ENST00000602277 528 ntBASIC0.05□□□□□ -2.4
HMGB3O15347 AL359999.1-201ENST00000604513 294 ntBASIC0.05□□□□□ -2.4
HMGB3O15347 AC100812.1-201ENST00000607622 580 ntBASIC0.05□□□□□ -2.4
HMGB3O15347 MTND5P17-201ENST00000418405 1603 ntBASIC0.05□□□□□ -2.4
HMGB3O15347 MIR411-201ENST00000362239 96 ntBASIC0.04□□□□□ -2.4
HMGB3O15347 RNU5E-10P-201ENST00000363506 118 ntBASIC0.04□□□□□ -2.4
HMGB3O15347 Y_RNA.338-201ENST00000365320 114 ntBASIC0.04□□□□□ -2.4
HMGB3O15347 RNU6-533P-201ENST00000384144 107 ntBASIC0.04□□□□□ -2.4
HMGB3O15347 Y_RNA.480-201ENST00000384364 102 ntBASIC0.04□□□□□ -2.4
HMGB3O15347 MRPL42P2-201ENST00000403169 426 ntBASIC0.04□□□□□ -2.4
HMGB3O15347 RPS26P42-201ENST00000413485 326 ntBASIC0.04□□□□□ -2.4
HMGB3O15347 CALM2P4-201ENST00000430810 426 ntBASIC0.04□□□□□ -2.4
HMGB3O15347 AC093019.1-201ENST00000443135 252 ntBASIC0.04□□□□□ -2.4
HMGB3O15347 MTCO3P8-201ENST00000453691 755 ntBASIC0.04□□□□□ -2.4
HMGB3O15347 SNORA25.17-201ENST00000517184 124 ntBASIC0.04□□□□□ -2.4
HMGB3O15347 MIR4431-201ENST00000579990 94 ntBASIC0.04□□□□□ -2.4
HMGB3O15347 SNRPGP20-201ENST00000604477 205 ntBASIC0.04□□□□□ -2.4
HMGB3O15347 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.04□□□□□ -2.4
HMGB3O15347 MIR6788-201ENST00000618842 66 ntBASIC0.04□□□□□ -2.4
HMGB3O15347 U6.73-201ENST00000619194 103 ntBASIC0.04□□□□□ -2.4
HMGB3O15347 MIR6513-201ENST00000621188 64 ntBASIC0.04□□□□□ -2.4
HMGB3O15347 C9orf84-203ENST00000374287 4721 ntAPPRIS P3 TSL 5 BASIC0.04□□□□□ -2.4
HMGB3O15347 AL589743.1-201ENST00000551932 2712 ntBASIC0.03□□□□□ -2.4
HMGB3O15347 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.03□□□□□ -2.4
HMGB3O15347 U8.16-201ENST00000391279 133 ntBASIC0.03□□□□□ -2.4
HMGB3O15347 RNU6ATAC15P-201ENST00000408279 121 ntBASIC0.03□□□□□ -2.4
HMGB3O15347 RNU6-1186P-201ENST00000410429 97 ntBASIC0.03□□□□□ -2.4
HMGB3O15347 Y_RNA.608-201ENST00000410647 95 ntBASIC0.03□□□□□ -2.4
HMGB3O15347 MTCO2P21-201ENST00000419780 677 ntBASIC0.03□□□□□ -2.4
HMGB3O15347 MTCO2P23-201ENST00000425216 680 ntBASIC0.03□□□□□ -2.4
HMGB3O15347 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC0.03□□□□□ -2.4
HMGB3O15347 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.03□□□□□ -2.4
HMGB3O15347 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC0.03□□□□□ -2.4
HMGB3O15347 AC093850.1-201ENST00000454121 251 ntBASIC0.03□□□□□ -2.4
HMGB3O15347 AC016550.1-201ENST00000505348 785 ntBASIC0.03□□□□□ -2.4
HMGB3O15347 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC0.03□□□□□ -2.4
HMGB3O15347 RNU6-1053P-201ENST00000515930 101 ntBASIC0.03□□□□□ -2.4
HMGB3O15347 SNORD111.1-201ENST00000516421 86 ntBASIC0.03□□□□□ -2.4
HMGB3O15347 AC022616.3-201ENST00000523940 148 ntBASIC0.03□□□□□ -2.4
HMGB3O15347 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.03□□□□□ -2.4
HMGB3O15347 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC0.03□□□□□ -2.4
HMGB3O15347 MIR4711-201ENST00000578274 70 ntBASIC0.03□□□□□ -2.4
HMGB3O15347 AC007014.2-201ENST00000615581 479 ntBASIC0.03□□□□□ -2.4
HMGB3O15347 AC011155.2-201ENST00000623202 216 ntBASIC0.03□□□□□ -2.4
HMGB3O15347 AC008873.1-201ENST00000625051 138 ntBASIC0.03□□□□□ -2.4
HMGB3O15347 AL390237.1-201ENST00000404226 1415 ntBASIC0.03□□□□□ -2.41
HMGB3O15347 Y_RNA.476-201ENST00000384347 108 ntBASIC0.02□□□□□ -2.41
HMGB3O15347 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC0.02□□□□□ -2.41
HMGB3O15347 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC0.02□□□□□ -2.41
HMGB3O15347 AC004854.1-201ENST00000440356 349 ntBASIC0.02□□□□□ -2.41
HMGB3O15347 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC0.02□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 124.4 ms