Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 Y_RNA.692-201ENST00000516627 105 ntBASIC3.57□□□□□ -1.84
HIF3AQ9Y2N7 SNORA31.21-201ENST00000517180 77 ntBASIC3.57□□□□□ -1.84
HIF3AQ9Y2N7 CYCSP29-201ENST00000533731 318 ntBASIC3.57□□□□□ -1.84
HIF3AQ9Y2N7 MIR3121-201ENST00000579680 77 ntBASIC3.57□□□□□ -1.84
HIF3AQ9Y2N7 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC3.57□□□□□ -1.84
HIF3AQ9Y2N7 AC112484.5-201ENST00000624189 228 ntBASIC3.57□□□□□ -1.84
HIF3AQ9Y2N7 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
HIF3AQ9Y2N7 IDE-202ENST00000371581 4480 ntTSL 2 BASIC3.57□□□□□ -1.84
HIF3AQ9Y2N7 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
HIF3AQ9Y2N7 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
HIF3AQ9Y2N7 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.57□□□□□ -1.84
HIF3AQ9Y2N7 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HIF3AQ9Y2N7 NDST3-201ENST00000296499 5961 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HIF3AQ9Y2N7 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC3.56□□□□□ -1.84
HIF3AQ9Y2N7 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HIF3AQ9Y2N7 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HIF3AQ9Y2N7 LINC01545-201ENST00000377879 521 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
HIF3AQ9Y2N7 RNY3P5-201ENST00000384127 102 ntBASIC3.56□□□□□ -1.84
HIF3AQ9Y2N7 SNORD116-21-201ENST00000384507 92 ntBASIC3.56□□□□□ -1.84
HIF3AQ9Y2N7 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC3.56□□□□□ -1.84
HIF3AQ9Y2N7 AC245047.4-201ENST00000433189 144 ntBASIC3.56□□□□□ -1.84
HIF3AQ9Y2N7 AL158147.1-201ENST00000443970 75 ntBASIC3.56□□□□□ -1.84
HIF3AQ9Y2N7 AL500522.2-201ENST00000448562 343 ntBASIC3.56□□□□□ -1.84
HIF3AQ9Y2N7 U3.44-201ENST00000458938 192 ntBASIC3.56□□□□□ -1.84
HIF3AQ9Y2N7 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.56□□□□□ -1.84
HIF3AQ9Y2N7 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
HIF3AQ9Y2N7 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.56□□□□□ -1.84
HIF3AQ9Y2N7 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC3.56□□□□□ -1.84
HIF3AQ9Y2N7 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
HIF3AQ9Y2N7 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
HIF3AQ9Y2N7 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.56□□□□□ -1.84
HIF3AQ9Y2N7 AC000403.1-201ENST00000613696 3585 ntBASIC3.56□□□□□ -1.84
HIF3AQ9Y2N7 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HIF3AQ9Y2N7 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
HIF3AQ9Y2N7 MIR450A1-201ENST00000362262 91 ntBASIC3.55□□□□□ -1.84
HIF3AQ9Y2N7 Y_RNA.114-201ENST00000363265 113 ntBASIC3.55□□□□□ -1.84
HIF3AQ9Y2N7 MIR548A3-201ENST00000385297 97 ntBASIC3.55□□□□□ -1.84
HIF3AQ9Y2N7 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
HIF3AQ9Y2N7 RNA5SP252-201ENST00000391131 119 ntBASIC3.55□□□□□ -1.84
HIF3AQ9Y2N7 RBMY2UP-201ENST00000453474 324 ntBASIC3.55□□□□□ -1.84
HIF3AQ9Y2N7 RPL23AP54-201ENST00000495129 419 ntBASIC3.55□□□□□ -1.84
HIF3AQ9Y2N7 SNORA31.1-201ENST00000515993 133 ntBASIC3.55□□□□□ -1.84
HIF3AQ9Y2N7 SNORA31.5-201ENST00000516190 133 ntBASIC3.55□□□□□ -1.84
HIF3AQ9Y2N7 MIR4474-201ENST00000579189 78 ntBASIC3.55□□□□□ -1.84
HIF3AQ9Y2N7 MIR5582-201ENST00000579697 68 ntBASIC3.55□□□□□ -1.84
HIF3AQ9Y2N7 POLR3GP1-201ENST00000594073 261 ntBASIC3.55□□□□□ -1.84
HIF3AQ9Y2N7 MIR486-1-201ENST00000612171 68 ntBASIC3.55□□□□□ -1.84
HIF3AQ9Y2N7 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
HIF3AQ9Y2N7 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.55□□□□□ -1.84
HIF3AQ9Y2N7 AC138915.1-201ENST00000565427 1685 ntBASIC3.55□□□□□ -1.84
HIF3AQ9Y2N7 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
HIF3AQ9Y2N7 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
HIF3AQ9Y2N7 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HIF3AQ9Y2N7 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.54□□□□□ -1.84
HIF3AQ9Y2N7 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.54□□□□□ -1.84
HIF3AQ9Y2N7 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.54□□□□□ -1.84
HIF3AQ9Y2N7 RNU6-1080P-201ENST00000383982 107 ntBASIC3.54□□□□□ -1.84
HIF3AQ9Y2N7 MIR1278-201ENST00000408753 81 ntBASIC3.54□□□□□ -1.84
HIF3AQ9Y2N7 RNU6-1077P-201ENST00000410506 102 ntBASIC3.54□□□□□ -1.84
HIF3AQ9Y2N7 AL121890.1-201ENST00000435457 205 ntBASIC3.54□□□□□ -1.84
HIF3AQ9Y2N7 MTCO1P44-201ENST00000441935 243 ntBASIC3.54□□□□□ -1.84
HIF3AQ9Y2N7 RPL23AP7-203ENST00000449021 469 ntBASIC3.54□□□□□ -1.84
HIF3AQ9Y2N7 CENPBD1P1-201ENST00000464061 469 ntBASIC3.54□□□□□ -1.84
HIF3AQ9Y2N7 AC090515.1-201ENST00000465295 476 ntBASIC3.54□□□□□ -1.84
HIF3AQ9Y2N7 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.54□□□□□ -1.84
HIF3AQ9Y2N7 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC3.54□□□□□ -1.84
HIF3AQ9Y2N7 AC027419.1-201ENST00000522976 328 ntBASIC3.54□□□□□ -1.84
HIF3AQ9Y2N7 YPEL5P3-201ENST00000547227 352 ntBASIC3.54□□□□□ -1.84
HIF3AQ9Y2N7 AL121890.5-201ENST00000620848 304 ntBASIC3.54□□□□□ -1.84
HIF3AQ9Y2N7 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.54□□□□□ -1.84
HIF3AQ9Y2N7 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
HIF3AQ9Y2N7 PARP8-211ENST00000505554 3825 ntTSL 5 BASIC3.54□□□□□ -1.84
HIF3AQ9Y2N7 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC3.54□□□□□ -1.84
HIF3AQ9Y2N7 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
HIF3AQ9Y2N7 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.53□□□□□ -1.84
HIF3AQ9Y2N7 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.53□□□□□ -1.84
HIF3AQ9Y2N7 RNU6-508P-201ENST00000363231 103 ntBASIC3.53□□□□□ -1.84
HIF3AQ9Y2N7 RNU4-41P-201ENST00000364426 143 ntBASIC3.53□□□□□ -1.84
HIF3AQ9Y2N7 RNU6-1164P-201ENST00000364428 107 ntBASIC3.53□□□□□ -1.84
HIF3AQ9Y2N7 Y_RNA.280-201ENST00000364765 112 ntBASIC3.53□□□□□ -1.84
HIF3AQ9Y2N7 RNU1-89P-201ENST00000384592 164 ntBASIC3.53□□□□□ -1.84
HIF3AQ9Y2N7 MIR586-201ENST00000385035 97 ntBASIC3.53□□□□□ -1.84
HIF3AQ9Y2N7 AL355796.1-201ENST00000406706 323 ntBASIC3.53□□□□□ -1.84
HIF3AQ9Y2N7 AC017083.1-201ENST00000428093 483 ntBASIC3.53□□□□□ -1.84
HIF3AQ9Y2N7 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC3.53□□□□□ -1.84
HIF3AQ9Y2N7 MRPL49P2-201ENST00000521066 465 ntBASIC3.53□□□□□ -1.84
HIF3AQ9Y2N7 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.53□□□□□ -1.84
HIF3AQ9Y2N7 RPL30P11-203ENST00000598995 310 ntBASIC3.53□□□□□ -1.84
HIF3AQ9Y2N7 AC244505.7-201ENST00000599675 272 ntBASIC3.53□□□□□ -1.84
HIF3AQ9Y2N7 AL049861.1-201ENST00000603130 150 ntBASIC3.53□□□□□ -1.84
HIF3AQ9Y2N7 AP003357.1-201ENST00000604497 148 ntBASIC3.53□□□□□ -1.84
HIF3AQ9Y2N7 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC3.53□□□□□ -1.84
HIF3AQ9Y2N7 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.53□□□□□ -1.84
HIF3AQ9Y2N7 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.53□□□□□ -1.84
HIF3AQ9Y2N7 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
HIF3AQ9Y2N7 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.85
HIF3AQ9Y2N7 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 DGKH-201ENST00000261491 17261 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.52□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 154 ms