Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 AC004386.2-201ENST00000441858 148 ntBASIC2.78□□□□□ -1.96
VSX1Q9NZR4 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.78□□□□□ -1.96
VSX1Q9NZR4 MTND1P19-201ENST00000511780 315 ntBASIC2.78□□□□□ -1.96
VSX1Q9NZR4 Y_RNA.673-201ENST00000516306 88 ntBASIC2.78□□□□□ -1.96
VSX1Q9NZR4 Y_RNA.680-201ENST00000516441 93 ntBASIC2.78□□□□□ -1.96
VSX1Q9NZR4 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC2.78□□□□□ -1.96
VSX1Q9NZR4 AC078938.1-201ENST00000620993 318 ntBASIC2.78□□□□□ -1.96
VSX1Q9NZR4 AC006001.4-201ENST00000622243 395 ntBASIC2.78□□□□□ -1.96
VSX1Q9NZR4 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.78□□□□□ -1.96
VSX1Q9NZR4 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC2.78□□□□□ -1.96
VSX1Q9NZR4 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
VSX1Q9NZR4 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
VSX1Q9NZR4 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC2.77□□□□□ -1.97
VSX1Q9NZR4 Y_RNA.136-201ENST00000363444 102 ntBASIC2.77□□□□□ -1.97
VSX1Q9NZR4 RNA5-8SP4-201ENST00000365096 150 ntBASIC2.77□□□□□ -1.97
VSX1Q9NZR4 SNORA7.4-201ENST00000384249 137 ntBASIC2.77□□□□□ -1.97
VSX1Q9NZR4 RNVU1-14-201ENST00000384770 164 ntBASIC2.77□□□□□ -1.97
VSX1Q9NZR4 MIR23B-201ENST00000384832 97 ntBASIC2.77□□□□□ -1.97
VSX1Q9NZR4 RNU6-1248P-201ENST00000391096 64 ntBASIC2.77□□□□□ -1.97
VSX1Q9NZR4 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC2.77□□□□□ -1.97
VSX1Q9NZR4 Z75741.1-201ENST00000446793 314 ntBASIC2.77□□□□□ -1.97
VSX1Q9NZR4 RN7SL75P-201ENST00000461926 281 ntBASIC2.77□□□□□ -1.97
VSX1Q9NZR4 AC091153.1-201ENST00000466297 402 ntBASIC2.77□□□□□ -1.97
VSX1Q9NZR4 RN7SL601P-201ENST00000471221 293 ntBASIC2.77□□□□□ -1.97
VSX1Q9NZR4 AC109925.1-201ENST00000478069 331 ntBASIC2.77□□□□□ -1.97
VSX1Q9NZR4 AC107222.1-201ENST00000510899 637 ntBASIC2.77□□□□□ -1.97
VSX1Q9NZR4 RNU2-44P-201ENST00000516795 194 ntBASIC2.77□□□□□ -1.97
VSX1Q9NZR4 MIR3684-201ENST00000579779 74 ntBASIC2.77□□□□□ -1.97
VSX1Q9NZR4 MIR5006-201ENST00000583027 110 ntBASIC2.77□□□□□ -1.97
VSX1Q9NZR4 U2.14-201ENST00000615943 113 ntBASIC2.77□□□□□ -1.97
VSX1Q9NZR4 MIR7975-201ENST00000619350 68 ntBASIC2.77□□□□□ -1.97
VSX1Q9NZR4 AC068205.3-201ENST00000636385 468 ntBASIC2.77□□□□□ -1.97
VSX1Q9NZR4 MIR3674-201ENST00000636576 68 ntBASIC2.77□□□□□ -1.97
VSX1Q9NZR4 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.77□□□□□ -1.97
VSX1Q9NZR4 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
VSX1Q9NZR4 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.77□□□□□ -1.97
VSX1Q9NZR4 Z82209.1-201ENST00000422141 2135 ntBASIC2.77□□□□□ -1.97
VSX1Q9NZR4 AC093831.2-201ENST00000624393 3427 ntBASIC2.77□□□□□ -1.97
VSX1Q9NZR4 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.97
VSX1Q9NZR4 AC138915.1-201ENST00000565427 1685 ntBASIC2.76□□□□□ -1.97
VSX1Q9NZR4 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.76□□□□□ -1.97
VSX1Q9NZR4 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.76□□□□□ -1.97
VSX1Q9NZR4 RNU6-514P-201ENST00000384208 107 ntBASIC2.76□□□□□ -1.97
VSX1Q9NZR4 Y_RNA.477-201ENST00000384352 108 ntBASIC2.76□□□□□ -1.97
VSX1Q9NZR4 AL603910.2-201ENST00000407268 136 ntBASIC2.76□□□□□ -1.97
VSX1Q9NZR4 RNU4-47P-201ENST00000410876 114 ntBASIC2.76□□□□□ -1.97
VSX1Q9NZR4 ELOCP21-201ENST00000412558 336 ntBASIC2.76□□□□□ -1.97
VSX1Q9NZR4 RAB28P5-201ENST00000427490 651 ntBASIC2.76□□□□□ -1.97
VSX1Q9NZR4 AC027124.2-201ENST00000428249 105 ntBASIC2.76□□□□□ -1.97
VSX1Q9NZR4 MRPS36P2-201ENST00000512569 299 ntBASIC2.76□□□□□ -1.97
VSX1Q9NZR4 RNU6-111P-201ENST00000517179 105 ntBASIC2.76□□□□□ -1.97
VSX1Q9NZR4 HSPE1P18-201ENST00000517602 280 ntBASIC2.76□□□□□ -1.97
VSX1Q9NZR4 RRN3P3-201ENST00000549207 578 ntBASIC2.76□□□□□ -1.97
VSX1Q9NZR4 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.76□□□□□ -1.97
VSX1Q9NZR4 AC008749.1-201ENST00000597650 306 ntBASIC2.76□□□□□ -1.97
VSX1Q9NZR4 AC008739.3-201ENST00000603262 127 ntBASIC2.76□□□□□ -1.97
VSX1Q9NZR4 AL357075.2-201ENST00000614906 189 ntBASIC2.76□□□□□ -1.97
VSX1Q9NZR4 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC2.76□□□□□ -1.97
VSX1Q9NZR4 AC002064.3-201ENST00000623448 346 ntBASIC2.76□□□□□ -1.97
VSX1Q9NZR4 MIR622-201ENST00000638396 96 ntBASIC2.76□□□□□ -1.97
VSX1Q9NZR4 AL035425.3-201ENST00000564206 4996 ntBASIC2.76□□□□□ -1.97
VSX1Q9NZR4 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.75□□□□□ -1.97
VSX1Q9NZR4 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC2.75□□□□□ -1.97
VSX1Q9NZR4 SNORA25.1-201ENST00000362326 128 ntBASIC2.75□□□□□ -1.97
VSX1Q9NZR4 snoU2_19.1-201ENST00000362361 80 ntBASIC2.75□□□□□ -1.97
VSX1Q9NZR4 Y_RNA.44-201ENST00000362676 108 ntBASIC2.75□□□□□ -1.97
VSX1Q9NZR4 RNU6-1266P-201ENST00000362794 105 ntBASIC2.75□□□□□ -1.97
VSX1Q9NZR4 SNORD32B-201ENST00000364460 84 ntBASIC2.75□□□□□ -1.97
VSX1Q9NZR4 SNORA68.1-201ENST00000364537 132 ntBASIC2.75□□□□□ -1.97
VSX1Q9NZR4 RNU6-200P-201ENST00000364743 107 ntBASIC2.75□□□□□ -1.97
VSX1Q9NZR4 Y_RNA.331-201ENST00000365267 102 ntBASIC2.75□□□□□ -1.97
VSX1Q9NZR4 SNORD15B-201ENST00000384714 146 ntBASIC2.75□□□□□ -1.97
VSX1Q9NZR4 POLR2KP2-201ENST00000438155 177 ntBASIC2.75□□□□□ -1.97
VSX1Q9NZR4 RPL39P40-201ENST00000445481 146 ntBASIC2.75□□□□□ -1.97
VSX1Q9NZR4 AC080013.2-201ENST00000460866 323 ntBASIC2.75□□□□□ -1.97
VSX1Q9NZR4 RN7SL863P-201ENST00000462370 296 ntBASIC2.75□□□□□ -1.97
VSX1Q9NZR4 RN7SKP43-201ENST00000516173 320 ntBASIC2.75□□□□□ -1.97
VSX1Q9NZR4 SCARNA3-201ENST00000517097 143 ntBASIC2.75□□□□□ -1.97
VSX1Q9NZR4 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC2.75□□□□□ -1.97
VSX1Q9NZR4 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.75□□□□□ -1.97
VSX1Q9NZR4 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.75□□□□□ -1.97
VSX1Q9NZR4 AC006380.1-201ENST00000603598 186 ntBASIC2.75□□□□□ -1.97
VSX1Q9NZR4 AC009779.6-201ENST00000603972 165 ntBASIC2.75□□□□□ -1.97
VSX1Q9NZR4 MIR92B-201ENST00000607575 96 ntBASIC2.75□□□□□ -1.97
VSX1Q9NZR4 AC012314.7-201ENST00000619693 93 ntBASIC2.75□□□□□ -1.97
VSX1Q9NZR4 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
VSX1Q9NZR4 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
VSX1Q9NZR4 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.75□□□□□ -1.97
VSX1Q9NZR4 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.74□□□□□ -1.97
VSX1Q9NZR4 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.74□□□□□ -1.97
VSX1Q9NZR4 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.74□□□□□ -1.97
VSX1Q9NZR4 AL161431.1-201ENST00000618966 4205 ntBASIC2.74□□□□□ -1.97
VSX1Q9NZR4 U3.8-201ENST00000363675 217 ntBASIC2.74□□□□□ -1.97
VSX1Q9NZR4 MIR300-201ENST00000401138 83 ntBASIC2.74□□□□□ -1.97
VSX1Q9NZR4 FO393413.1-201ENST00000402892 195 ntBASIC2.74□□□□□ -1.97
VSX1Q9NZR4 MIR1294-201ENST00000408503 142 ntBASIC2.74□□□□□ -1.97
VSX1Q9NZR4 RNA5SP274-201ENST00000410484 108 ntBASIC2.74□□□□□ -1.97
VSX1Q9NZR4 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.74□□□□□ -1.97
VSX1Q9NZR4 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.74□□□□□ -1.97
VSX1Q9NZR4 AC024067.1-201ENST00000426199 223 ntBASIC2.74□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 129.9 ms