Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 FO393413.1-201ENST00000402892 195 ntBASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 RNU6-1203P-201ENST00000410703 110 ntBASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 RNU2-63P-201ENST00000410792 194 ntBASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 SNORD127-201ENST00000458892 86 ntBASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 AC098869.1-201ENST00000481627 292 ntBASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 MIR5195-201ENST00000583555 115 ntBASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 MIR4506-201ENST00000584693 77 ntBASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 AC037487.3-201ENST00000606668 112 ntBASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 AL357075.2-201ENST00000614906 189 ntBASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC3.2□□□□□ -1.9
TRIM39Q9HCM9 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 RNU1-72P-201ENST00000362976 153 ntBASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 RNU6-961P-201ENST00000363893 105 ntBASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 Y_RNA.333-201ENST00000365274 102 ntBASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 RNA5SP475-201ENST00000410568 110 ntBASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 RNA5SP229-201ENST00000410809 99 ntBASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 RPL23AP36-201ENST00000413895 458 ntBASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 AL513477.1-202ENST00000417061 214 ntBASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 RPL39P38-201ENST00000467018 153 ntBASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 AC109925.1-201ENST00000478069 331 ntBASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 RNU6-107P-201ENST00000516643 102 ntBASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 RNU1-117P-201ENST00000517041 158 ntBASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 AC023157.2-201ENST00000540596 141 ntBASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 MDM2-232ENST00000544561 213 ntTSL 5 BASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 MIR2682-201ENST00000580305 110 ntBASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 MIR4423-201ENST00000580922 80 ntBASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 AC138915.1-201ENST00000565427 1685 ntBASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 ANKRD30BP1-201ENST00000451052 2186 ntBASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 NEBL-202ENST00000377122 9216 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
TRIM39Q9HCM9 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.18□□□□□ -1.9
TRIM39Q9HCM9 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.18□□□□□ -1.9
TRIM39Q9HCM9 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
TRIM39Q9HCM9 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
TRIM39Q9HCM9 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.18□□□□□ -1.9
TRIM39Q9HCM9 snoU2_19.2-201ENST00000363024 80 ntBASIC3.18□□□□□ -1.9
TRIM39Q9HCM9 Y_RNA.307-201ENST00000365022 117 ntBASIC3.18□□□□□ -1.9
TRIM39Q9HCM9 RNU6-1175P-201ENST00000365200 107 ntBASIC3.18□□□□□ -1.9
TRIM39Q9HCM9 RNU6-1026P-201ENST00000384465 108 ntBASIC3.18□□□□□ -1.9
TRIM39Q9HCM9 Y_RNA.518-201ENST00000384552 113 ntBASIC3.18□□□□□ -1.9
TRIM39Q9HCM9 Y_RNA.570-201ENST00000384750 101 ntBASIC3.18□□□□□ -1.9
TRIM39Q9HCM9 SNORA53-201ENST00000391141 249 ntBASIC3.18□□□□□ -1.9
TRIM39Q9HCM9 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC3.18□□□□□ -1.9
TRIM39Q9HCM9 RAB28P5-201ENST00000427490 651 ntBASIC3.18□□□□□ -1.9
TRIM39Q9HCM9 AC074290.1-201ENST00000448883 135 ntBASIC3.18□□□□□ -1.9
TRIM39Q9HCM9 SNORA64.4-201ENST00000516632 81 ntBASIC3.18□□□□□ -1.9
TRIM39Q9HCM9 AC018630.3-201ENST00000542637 96 ntBASIC3.18□□□□□ -1.9
TRIM39Q9HCM9 MIR3651-201ENST00000630427 90 ntBASIC3.18□□□□□ -1.9
TRIM39Q9HCM9 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC3.18□□□□□ -1.9
TRIM39Q9HCM9 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC3.18□□□□□ -1.9
TRIM39Q9HCM9 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.18□□□□□ -1.9
TRIM39Q9HCM9 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.18□□□□□ -1.9
TRIM39Q9HCM9 MTND5P6-201ENST00000422338 1798 ntBASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 AL391987.6-201ENST00000305671 199 ntBASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 MIR335-201ENST00000362173 94 ntBASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 Y_RNA.14-201ENST00000362415 103 ntBASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 RNU6-290P-201ENST00000365212 101 ntBASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 RNU6-1264P-201ENST00000383891 107 ntBASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 Y_RNA.415-201ENST00000384012 112 ntBASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 MIR215-201ENST00000384858 110 ntBASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 MIR548H3-201ENST00000408771 118 ntBASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 RNU6-847P-201ENST00000411115 108 ntBASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 AL161788.1-201ENST00000441805 169 ntBASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 HMGN1P18-201ENST00000457642 277 ntBASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 RNU6-496P-201ENST00000516145 99 ntBASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 DEFB131C-201ENST00000528817 165 ntBASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 AC013799.1-201ENST00000531157 348 ntTSL 2 BASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 MIR5004-201ENST00000579078 107 ntBASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 AL449363.1-201ENST00000617815 186 ntBASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 AC073476.4-201ENST00000628409 72 ntBASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 MIR3674-201ENST00000636576 68 ntBASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC3.17□□□□□ -1.9
TRIM39Q9HCM9 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.16□□□□□ -1.9
TRIM39Q9HCM9 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms