Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 RNU6-199P-201ENST00000362954 107 ntBASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 RNU6-283P-201ENST00000364788 107 ntBASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 RNY3P5-201ENST00000384127 102 ntBASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 MIR548B-201ENST00000385247 97 ntBASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 SNORA57.3-201ENST00000411095 141 ntBASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 YME1L1P1-201ENST00000429435 297 ntBASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 AL445584.1-201ENST00000431451 330 ntBASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 HSPE1P13-201ENST00000451143 297 ntBASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 AL137159.1-201ENST00000452808 512 ntBASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 RNU7-141P-201ENST00000459304 62 ntBASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 HSPE1P18-201ENST00000517602 280 ntBASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 MIR4724-201ENST00000579485 89 ntBASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 AL670379.2-201ENST00000604983 252 ntBASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 AC099778.2-201ENST00000610904 211 ntBASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 AL121772.2-201ENST00000614331 297 ntBASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 MAPK10-373ENST00000641983 6772 ntBASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 AL513302.2-201ENST00000562313 1842 ntBASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 STEAP4-202ENST00000380079 9988 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
UBE3DQ7Z6J8 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 AL136164.4-201ENST00000625013 2135 ntBASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 AC100821.1-201ENST00000523153 2479 ntBASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 Y_RNA.24-201ENST00000362508 103 ntBASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 Y_RNA.127-201ENST00000363386 109 ntBASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 RNU6-1048P-201ENST00000364054 107 ntBASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 SNORD32B-201ENST00000364460 84 ntBASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 RNA5SP51-201ENST00000364750 119 ntBASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 RNU6-969P-201ENST00000383900 105 ntBASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 RNU6-643P-201ENST00000384018 107 ntBASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 MIR300-201ENST00000401138 83 ntBASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 CYCSP19-201ENST00000411715 316 ntBASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 MTND4LP9-201ENST00000427694 174 ntBASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 AC112771.1-201ENST00000463581 102 ntBASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 AC006445.1-201ENST00000491925 405 ntBASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 RNU6-1007P-201ENST00000516586 107 ntBASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
UBE3DQ7Z6J8 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
UBE3DQ7Z6J8 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
UBE3DQ7Z6J8 FER-201ENST00000281092 12119 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
UBE3DQ7Z6J8 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
UBE3DQ7Z6J8 MIR367-201ENST00000362299 68 ntBASIC3.46□□□□□ -1.86
UBE3DQ7Z6J8 RNA5SP124-201ENST00000362739 110 ntBASIC3.46□□□□□ -1.86
UBE3DQ7Z6J8 Y_RNA.172-201ENST00000363765 102 ntBASIC3.46□□□□□ -1.86
UBE3DQ7Z6J8 RNA5SP42-201ENST00000364278 115 ntBASIC3.46□□□□□ -1.86
UBE3DQ7Z6J8 MIR873-201ENST00000401120 77 ntBASIC3.46□□□□□ -1.86
UBE3DQ7Z6J8 MIR1185-2-201ENST00000408687 86 ntBASIC3.46□□□□□ -1.86
UBE3DQ7Z6J8 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.46□□□□□ -1.86
UBE3DQ7Z6J8 AC114982.1-201ENST00000469402 321 ntBASIC3.46□□□□□ -1.86
UBE3DQ7Z6J8 RPL36AP21-201ENST00000490372 323 ntBASIC3.46□□□□□ -1.86
UBE3DQ7Z6J8 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.46□□□□□ -1.86
UBE3DQ7Z6J8 SNORA31.1-201ENST00000515993 133 ntBASIC3.46□□□□□ -1.86
UBE3DQ7Z6J8 SNORA31.5-201ENST00000516190 133 ntBASIC3.46□□□□□ -1.86
UBE3DQ7Z6J8 SNORA25.12-201ENST00000516202 82 ntBASIC3.46□□□□□ -1.86
UBE3DQ7Z6J8 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.46□□□□□ -1.86
UBE3DQ7Z6J8 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.46□□□□□ -1.86
UBE3DQ7Z6J8 TUG1_4.1-201ENST00000619464 181 ntBASIC3.46□□□□□ -1.86
UBE3DQ7Z6J8 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.46□□□□□ -1.86
UBE3DQ7Z6J8 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.46□□□□□ -1.86
UBE3DQ7Z6J8 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.46□□□□□ -1.86
UBE3DQ7Z6J8 AC068700.1-201ENST00000565862 3754 ntBASIC3.46□□□□□ -1.86
UBE3DQ7Z6J8 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 snoU2_19.1-201ENST00000362361 80 ntBASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 RNU1-105P-201ENST00000363470 161 ntBASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 RNU6-271P-201ENST00000363858 105 ntBASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 RNU6-1305P-201ENST00000364353 104 ntBASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 RNU6-728P-201ENST00000365375 104 ntBASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 SNORD116-14-201ENST00000383894 92 ntBASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 SNORD116-17-201ENST00000383929 92 ntBASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 SNORD116-15-201ENST00000384445 92 ntBASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 SNORD116-19-201ENST00000384729 92 ntBASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 AC017083.1-201ENST00000428093 483 ntBASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 RPS4XP2-201ENST00000458402 793 ntBASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 AC112693.2-201ENST00000556538 232 ntBASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 AC244205.2-202ENST00000635781 342 ntBASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 274.9 ms