Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.18□□□□□ -1.9
CBX4O00257 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.18□□□□□ -1.9
CBX4O00257 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CBX4O00257 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.17□□□□□ -1.9
CBX4O00257 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
CBX4O00257 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CBX4O00257 RNU6-727P-201ENST00000363592 107 ntBASIC3.17□□□□□ -1.9
CBX4O00257 SNORA5B-201ENST00000363786 132 ntBASIC3.17□□□□□ -1.9
CBX4O00257 RNU6-805P-201ENST00000365643 106 ntBASIC3.17□□□□□ -1.9
CBX4O00257 Y_RNA.483-201ENST00000384380 101 ntBASIC3.17□□□□□ -1.9
CBX4O00257 MT-TW-201ENST00000387382 68 ntBASIC3.17□□□□□ -1.9
CBX4O00257 SNORD67-201ENST00000390833 111 ntBASIC3.17□□□□□ -1.9
CBX4O00257 SNORA12-201ENST00000391162 147 ntBASIC3.17□□□□□ -1.9
CBX4O00257 RNU2-20P-201ENST00000410425 191 ntBASIC3.17□□□□□ -1.9
CBX4O00257 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.17□□□□□ -1.9
CBX4O00257 RNU6-625P-201ENST00000459412 107 ntBASIC3.17□□□□□ -1.9
CBX4O00257 RPL26P26-201ENST00000480251 434 ntBASIC3.17□□□□□ -1.9
CBX4O00257 AC098869.1-201ENST00000481627 292 ntBASIC3.17□□□□□ -1.9
CBX4O00257 RN7SL283P-201ENST00000489055 303 ntBASIC3.17□□□□□ -1.9
CBX4O00257 RNA5SP217-201ENST00000515959 91 ntBASIC3.17□□□□□ -1.9
CBX4O00257 SNORA64.4-201ENST00000516632 81 ntBASIC3.17□□□□□ -1.9
CBX4O00257 RNU6-344P-201ENST00000516635 111 ntBASIC3.17□□□□□ -1.9
CBX4O00257 RNU2-44P-201ENST00000516795 194 ntBASIC3.17□□□□□ -1.9
CBX4O00257 RNU6-1271P-201ENST00000517049 105 ntBASIC3.17□□□□□ -1.9
CBX4O00257 RNU6-586P-201ENST00000517265 104 ntBASIC3.17□□□□□ -1.9
CBX4O00257 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.17□□□□□ -1.9
CBX4O00257 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.17□□□□□ -1.9
CBX4O00257 AC104027.1-201ENST00000521887 300 ntBASIC3.17□□□□□ -1.9
CBX4O00257 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.17□□□□□ -1.9
CBX4O00257 RRN3P3-201ENST00000549207 578 ntBASIC3.17□□□□□ -1.9
CBX4O00257 AC233702.2-202ENST00000562547 291 ntBASIC3.17□□□□□ -1.9
CBX4O00257 SNORD11B-201ENST00000607707 90 ntBASIC3.17□□□□□ -1.9
CBX4O00257 MIR7106-201ENST00000612419 65 ntBASIC3.17□□□□□ -1.9
CBX4O00257 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.17□□□□□ -1.9
CBX4O00257 AL357075.2-201ENST00000614906 189 ntBASIC3.17□□□□□ -1.9
CBX4O00257 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CBX4O00257 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CBX4O00257 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
CBX4O00257 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CBX4O00257 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.16□□□□□ -1.9
CBX4O00257 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CBX4O00257 RNU6-626P-201ENST00000363354 107 ntBASIC3.16□□□□□ -1.9
CBX4O00257 Y_RNA.230-201ENST00000364348 109 ntBASIC3.16□□□□□ -1.9
CBX4O00257 SNORD32B-201ENST00000364460 84 ntBASIC3.16□□□□□ -1.9
CBX4O00257 Y_RNA.498-201ENST00000384460 102 ntBASIC3.16□□□□□ -1.9
CBX4O00257 AL033519.2-201ENST00000403958 392 ntBASIC3.16□□□□□ -1.9
CBX4O00257 Y_RNA.602-201ENST00000410535 92 ntBASIC3.16□□□□□ -1.9
CBX4O00257 RNU2-25P-201ENST00000411041 191 ntBASIC3.16□□□□□ -1.9
CBX4O00257 RPL32P35-201ENST00000415214 394 ntBASIC3.16□□□□□ -1.9
CBX4O00257 AL390729.2-201ENST00000416137 156 ntBASIC3.16□□□□□ -1.9
CBX4O00257 AC009237.7-201ENST00000447357 229 ntBASIC3.16□□□□□ -1.9
CBX4O00257 AC117440.1-201ENST00000474107 571 ntBASIC3.16□□□□□ -1.9
CBX4O00257 AC006483.1-201ENST00000487308 313 ntBASIC3.16□□□□□ -1.9
CBX4O00257 CKS1BP2-201ENST00000497342 240 ntBASIC3.16□□□□□ -1.9
CBX4O00257 AC023141.11-201ENST00000508864 202 ntBASIC3.16□□□□□ -1.9
CBX4O00257 KRTAP13-6P-201ENST00000508999 371 ntBASIC3.16□□□□□ -1.9
CBX4O00257 AC008885.1-201ENST00000514930 301 ntBASIC3.16□□□□□ -1.9
CBX4O00257 RNU1-143P-201ENST00000516296 146 ntBASIC3.16□□□□□ -1.9
CBX4O00257 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC3.16□□□□□ -1.9
CBX4O00257 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC3.16□□□□□ -1.9
CBX4O00257 AC018448.1-201ENST00000552843 316 ntBASIC3.16□□□□□ -1.9
CBX4O00257 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.16□□□□□ -1.9
CBX4O00257 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC3.16□□□□□ -1.9
CBX4O00257 AL713866.2-201ENST00000603579 219 ntBASIC3.16□□□□□ -1.9
CBX4O00257 U1.23-201ENST00000610293 146 ntBASIC3.16□□□□□ -1.9
CBX4O00257 RNU1-68P-201ENST00000615382 146 ntBASIC3.16□□□□□ -1.9
CBX4O00257 U1.39-201ENST00000621562 146 ntBASIC3.16□□□□□ -1.9
CBX4O00257 MIR622-201ENST00000638396 96 ntBASIC3.16□□□□□ -1.9
CBX4O00257 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
CBX4O00257 AC080128.1-201ENST00000474389 1917 ntBASIC3.16□□□□□ -1.9
CBX4O00257 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
CBX4O00257 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
CBX4O00257 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
CBX4O00257 Y_RNA.84-201ENST00000363011 104 ntBASIC3.15□□□□□ -1.91
CBX4O00257 SNORD113-8-201ENST00000363497 74 ntBASIC3.15□□□□□ -1.91
CBX4O00257 RNU6-20P-201ENST00000384106 107 ntBASIC3.15□□□□□ -1.91
CBX4O00257 RNU6-1274P-201ENST00000384557 107 ntBASIC3.15□□□□□ -1.91
CBX4O00257 RNU6-21P-201ENST00000384710 107 ntBASIC3.15□□□□□ -1.91
CBX4O00257 MIR1294-201ENST00000408503 142 ntBASIC3.15□□□□□ -1.91
CBX4O00257 CBX3P6-201ENST00000430257 527 ntBASIC3.15□□□□□ -1.91
CBX4O00257 RPL23AP58-201ENST00000440453 469 ntBASIC3.15□□□□□ -1.91
CBX4O00257 AC080013.2-201ENST00000460866 323 ntBASIC3.15□□□□□ -1.91
CBX4O00257 AC083906.5-201ENST00000503722 328 ntBASIC3.15□□□□□ -1.91
CBX4O00257 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC3.15□□□□□ -1.91
CBX4O00257 AK6P2-201ENST00000549020 471 ntBASIC3.15□□□□□ -1.91
CBX4O00257 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.15□□□□□ -1.91
CBX4O00257 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.15□□□□□ -1.91
CBX4O00257 AC005176.2-201ENST00000596933 147 ntBASIC3.15□□□□□ -1.91
CBX4O00257 AC011373.1-201ENST00000607270 237 ntBASIC3.15□□□□□ -1.91
CBX4O00257 MIR5739-201ENST00000619803 80 ntBASIC3.15□□□□□ -1.91
CBX4O00257 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.15□□□□□ -1.91
CBX4O00257 AC010615.1-201ENST00000594254 1764 ntBASIC3.15□□□□□ -1.91
CBX4O00257 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
CBX4O00257 RNU1-72P-201ENST00000362976 153 ntBASIC3.14□□□□□ -1.91
CBX4O00257 SNORD81.1-201ENST00000363064 77 ntBASIC3.14□□□□□ -1.91
CBX4O00257 SNORD56.3-201ENST00000363507 71 ntBASIC3.14□□□□□ -1.91
CBX4O00257 RNU6-961P-201ENST00000363893 105 ntBASIC3.14□□□□□ -1.91
CBX4O00257 SNORA72.2-201ENST00000365028 127 ntBASIC3.14□□□□□ -1.91
CBX4O00257 Y_RNA.476-201ENST00000384347 108 ntBASIC3.14□□□□□ -1.91
CBX4O00257 Y_RNA.581-201ENST00000391017 97 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 99.7 ms