Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 Y_RNA.812-201ENST00000610788 101 ntBASIC3.48□□□□□ -1.85
SF3A1Q15459 Y_RNA.784-201ENST00000613803 101 ntBASIC3.48□□□□□ -1.85
SF3A1Q15459 Y_RNA.787-201ENST00000616522 101 ntBASIC3.48□□□□□ -1.85
SF3A1Q15459 Y_RNA.780-201ENST00000617336 101 ntBASIC3.48□□□□□ -1.85
SF3A1Q15459 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.48□□□□□ -1.85
SF3A1Q15459 Y_RNA.801-201ENST00000619005 101 ntBASIC3.48□□□□□ -1.85
SF3A1Q15459 AC007318.2-201ENST00000620999 243 ntBASIC3.48□□□□□ -1.85
SF3A1Q15459 MIR622-201ENST00000638396 96 ntBASIC3.48□□□□□ -1.85
SF3A1Q15459 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
SF3A1Q15459 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
SF3A1Q15459 RNA5SP361-201ENST00000362686 118 ntBASIC3.47□□□□□ -1.85
SF3A1Q15459 Y_RNA.326-201ENST00000365176 113 ntBASIC3.47□□□□□ -1.85
SF3A1Q15459 AC117470.1-201ENST00000381974 330 ntBASIC3.47□□□□□ -1.85
SF3A1Q15459 Y_RNA.424-201ENST00000384063 103 ntBASIC3.47□□□□□ -1.85
SF3A1Q15459 MRPL42P3-201ENST00000401492 326 ntBASIC3.47□□□□□ -1.85
SF3A1Q15459 RNA5SP492-201ENST00000411330 114 ntBASIC3.47□□□□□ -1.85
SF3A1Q15459 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC3.47□□□□□ -1.85
SF3A1Q15459 RNU7-14P-201ENST00000459331 62 ntBASIC3.47□□□□□ -1.85
SF3A1Q15459 RNU6-911P-201ENST00000516523 104 ntBASIC3.47□□□□□ -1.85
SF3A1Q15459 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.47□□□□□ -1.85
SF3A1Q15459 YPEL5P2-201ENST00000605553 359 ntBASIC3.47□□□□□ -1.85
SF3A1Q15459 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC3.47□□□□□ -1.85
SF3A1Q15459 AC010999.1-201ENST00000611856 324 ntBASIC3.47□□□□□ -1.85
SF3A1Q15459 U4atac.1-201ENST00000618345 95 ntBASIC3.47□□□□□ -1.85
SF3A1Q15459 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
SF3A1Q15459 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
SF3A1Q15459 AC091812.1-201ENST00000432235 1948 ntBASIC3.46□□□□□ -1.85
SF3A1Q15459 AC135776.4-201ENST00000624300 1904 ntBASIC3.46□□□□□ -1.85
SF3A1Q15459 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
SF3A1Q15459 RNU6-727P-201ENST00000363592 107 ntBASIC3.46□□□□□ -1.86
SF3A1Q15459 Y_RNA.179-201ENST00000363844 90 ntBASIC3.46□□□□□ -1.86
SF3A1Q15459 SNORA33.2-201ENST00000365413 134 ntBASIC3.46□□□□□ -1.86
SF3A1Q15459 RNU6-1072P-201ENST00000384703 107 ntBASIC3.46□□□□□ -1.86
SF3A1Q15459 RNU6-443P-201ENST00000384780 107 ntBASIC3.46□□□□□ -1.86
SF3A1Q15459 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC3.46□□□□□ -1.86
SF3A1Q15459 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC3.46□□□□□ -1.86
SF3A1Q15459 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.46□□□□□ -1.86
SF3A1Q15459 AC009237.7-201ENST00000447357 229 ntBASIC3.46□□□□□ -1.86
SF3A1Q15459 AL049873.1-201ENST00000480540 376 ntBASIC3.46□□□□□ -1.86
SF3A1Q15459 RNU1-117P-201ENST00000517041 158 ntBASIC3.46□□□□□ -1.86
SF3A1Q15459 RNU6-667P-201ENST00000517186 102 ntBASIC3.46□□□□□ -1.86
SF3A1Q15459 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.46□□□□□ -1.86
SF3A1Q15459 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.46□□□□□ -1.86
SF3A1Q15459 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC3.46□□□□□ -1.86
SF3A1Q15459 MIR1248-201ENST00000629190 106 ntBASIC3.46□□□□□ -1.86
SF3A1Q15459 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
SF3A1Q15459 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
SF3A1Q15459 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
SF3A1Q15459 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
SF3A1Q15459 RNU6-1301P-201ENST00000362724 104 ntBASIC3.45□□□□□ -1.86
SF3A1Q15459 RNU6-639P-201ENST00000384074 107 ntBASIC3.45□□□□□ -1.86
SF3A1Q15459 RNU6-281P-201ENST00000384212 103 ntBASIC3.45□□□□□ -1.86
SF3A1Q15459 RNU6-793P-201ENST00000384233 104 ntBASIC3.45□□□□□ -1.86
SF3A1Q15459 SNORA54-201ENST00000384281 123 ntBASIC3.45□□□□□ -1.86
SF3A1Q15459 SNORA48.5-201ENST00000391143 135 ntBASIC3.45□□□□□ -1.86
SF3A1Q15459 AL033519.2-201ENST00000403958 392 ntBASIC3.45□□□□□ -1.86
SF3A1Q15459 AP001486.1-201ENST00000463339 476 ntBASIC3.45□□□□□ -1.86
SF3A1Q15459 RN7SL504P-201ENST00000494496 287 ntBASIC3.45□□□□□ -1.86
SF3A1Q15459 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC3.45□□□□□ -1.86
SF3A1Q15459 RNU6-475P-201ENST00000516073 104 ntBASIC3.45□□□□□ -1.86
SF3A1Q15459 SNORA40.14-201ENST00000516543 86 ntBASIC3.45□□□□□ -1.86
SF3A1Q15459 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC3.45□□□□□ -1.86
SF3A1Q15459 AL442163.3-201ENST00000554110 156 ntBASIC3.45□□□□□ -1.86
SF3A1Q15459 MIR4658-201ENST00000584344 65 ntBASIC3.45□□□□□ -1.86
SF3A1Q15459 RPS29P30-201ENST00000600975 111 ntBASIC3.45□□□□□ -1.86
SF3A1Q15459 AC099654.10-201ENST00000640395 161 ntBASIC3.45□□□□□ -1.86
SF3A1Q15459 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.45□□□□□ -1.86
SF3A1Q15459 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
SF3A1Q15459 MIR22-201ENST00000362190 85 ntBASIC3.44□□□□□ -1.86
SF3A1Q15459 RNU1-76P-201ENST00000362903 159 ntBASIC3.44□□□□□ -1.86
SF3A1Q15459 SNORA51.4-201ENST00000364993 124 ntBASIC3.44□□□□□ -1.86
SF3A1Q15459 SNORA25B-201ENST00000365507 128 ntBASIC3.44□□□□□ -1.86
SF3A1Q15459 SNORA51.11-201ENST00000384442 131 ntBASIC3.44□□□□□ -1.86
SF3A1Q15459 AL357139.1-201ENST00000407792 426 ntBASIC3.44□□□□□ -1.86
SF3A1Q15459 BMS1P22-201ENST00000414726 313 ntBASIC3.44□□□□□ -1.86
SF3A1Q15459 AC010095.1-201ENST00000443543 144 ntBASIC3.44□□□□□ -1.86
SF3A1Q15459 Y_RNA.683-201ENST00000516508 93 ntBASIC3.44□□□□□ -1.86
SF3A1Q15459 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.44□□□□□ -1.86
SF3A1Q15459 MIR4298-201ENST00000584380 73 ntBASIC3.44□□□□□ -1.86
SF3A1Q15459 AL365361.1-201ENST00000566942 3481 ntBASIC3.44□□□□□ -1.86
SF3A1Q15459 AC008264.2-201ENST00000610193 3731 ntBASIC3.44□□□□□ -1.86
SF3A1Q15459 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.44□□□□□ -1.86
SF3A1Q15459 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
SF3A1Q15459 RNU1-91P-201ENST00000364746 163 ntBASIC3.43□□□□□ -1.86
SF3A1Q15459 MIR887-201ENST00000401258 79 ntBASIC3.43□□□□□ -1.86
SF3A1Q15459 AC004866.1-201ENST00000411748 78 ntBASIC3.43□□□□□ -1.86
SF3A1Q15459 ARL5AP4-201ENST00000430731 512 ntBASIC3.43□□□□□ -1.86
SF3A1Q15459 AC112492.4-201ENST00000456549 352 ntBASIC3.43□□□□□ -1.86
SF3A1Q15459 AC091179.3-201ENST00000474761 144 ntBASIC3.43□□□□□ -1.86
SF3A1Q15459 AP004217.1-201ENST00000480579 346 ntBASIC3.43□□□□□ -1.86
SF3A1Q15459 RNA5SP490-201ENST00000517141 136 ntBASIC3.43□□□□□ -1.86
SF3A1Q15459 MIR5004-201ENST00000579078 107 ntBASIC3.43□□□□□ -1.86
SF3A1Q15459 AC006504.6-201ENST00000590142 199 ntBASIC3.43□□□□□ -1.86
SF3A1Q15459 SNORD11B-201ENST00000607707 90 ntBASIC3.43□□□□□ -1.86
SF3A1Q15459 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
SF3A1Q15459 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC3.42□□□□□ -1.86
SF3A1Q15459 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC3.42□□□□□ -1.86
SF3A1Q15459 MTND5P35-201ENST00000557537 1720 ntBASIC3.42□□□□□ -1.86
SF3A1Q15459 RNU1-62P-201ENST00000362599 164 ntBASIC3.42□□□□□ -1.86
SF3A1Q15459 RNU6-438P-201ENST00000365561 103 ntBASIC3.42□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 129.1 ms