Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 MIR3646-201ENST00000578301 84 ntBASIC4.04□□□□□ -1.76
DEPDC4Q8N2C3 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.04□□□□□ -1.76
DEPDC4Q8N2C3 AC006435.5-201ENST00000624486 112 ntBASIC4.04□□□□□ -1.76
DEPDC4Q8N2C3 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.04□□□□□ -1.76
DEPDC4Q8N2C3 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
DEPDC4Q8N2C3 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.04□□□□□ -1.76
DEPDC4Q8N2C3 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC4.04□□□□□ -1.76
DEPDC4Q8N2C3 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
DEPDC4Q8N2C3 Y_RNA.124-201ENST00000363339 93 ntBASIC4.03□□□□□ -1.76
DEPDC4Q8N2C3 RNA5SP479-201ENST00000364858 117 ntBASIC4.03□□□□□ -1.76
DEPDC4Q8N2C3 SNORD31B-201ENST00000364977 69 ntBASIC4.03□□□□□ -1.76
DEPDC4Q8N2C3 RNU6-234P-201ENST00000365229 104 ntBASIC4.03□□□□□ -1.76
DEPDC4Q8N2C3 RNU6-728P-201ENST00000365375 104 ntBASIC4.03□□□□□ -1.76
DEPDC4Q8N2C3 MIR518C-201ENST00000384822 101 ntBASIC4.03□□□□□ -1.76
DEPDC4Q8N2C3 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
DEPDC4Q8N2C3 AL606845.1-201ENST00000404881 255 ntBASIC4.03□□□□□ -1.76
DEPDC4Q8N2C3 MIR1193-201ENST00000408109 78 ntBASIC4.03□□□□□ -1.76
DEPDC4Q8N2C3 RNU4-43P-201ENST00000410628 137 ntBASIC4.03□□□□□ -1.76
DEPDC4Q8N2C3 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC4.03□□□□□ -1.76
DEPDC4Q8N2C3 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC4.03□□□□□ -1.76
DEPDC4Q8N2C3 AC009414.1-201ENST00000427200 443 ntBASIC4.03□□□□□ -1.76
DEPDC4Q8N2C3 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC4.03□□□□□ -1.76
DEPDC4Q8N2C3 RNU6-1337P-201ENST00000516525 95 ntBASIC4.03□□□□□ -1.76
DEPDC4Q8N2C3 AC109329.2-201ENST00000519658 482 ntBASIC4.03□□□□□ -1.76
DEPDC4Q8N2C3 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.03□□□□□ -1.76
DEPDC4Q8N2C3 AC105129.1-201ENST00000560250 297 ntBASIC4.03□□□□□ -1.76
DEPDC4Q8N2C3 AL365222.1-201ENST00000614661 98 ntBASIC4.03□□□□□ -1.76
DEPDC4Q8N2C3 AC068647.2-201ENST00000637380 353 ntBASIC4.03□□□□□ -1.76
DEPDC4Q8N2C3 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
DEPDC4Q8N2C3 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
DEPDC4Q8N2C3 ABCA12-202ENST00000389661 7005 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 AC100821.1-201ENST00000523153 2479 ntBASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 RNU6-199P-201ENST00000362954 107 ntBASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 Y_RNA.172-201ENST00000363765 102 ntBASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 MIR15B-201ENST00000385045 98 ntBASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 SNORA36B-201ENST00000410438 131 ntBASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 AC010154.1-201ENST00000425857 269 ntBASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 RPS12P10-201ENST00000427031 377 ntBASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 AC004975.1-201ENST00000428733 208 ntBASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 MICF-203ENST00000432679 129 ntBASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 AC011998.1-201ENST00000433403 117 ntBASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 RPS26P15-201ENST00000488067 348 ntBASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 AC093663.1-201ENST00000497190 394 ntBASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 SNORD59.2-201ENST00000516873 68 ntBASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 MIR4277-201ENST00000578298 84 ntBASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 AL445567.2-201ENST00000618935 498 ntBASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 AC012640.5-201ENST00000623897 319 ntBASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 AC068724.3-201ENST00000625906 87 ntBASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 MIR6830-201ENST00000636015 70 ntBASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 ZNF962P-201ENST00000443465 3140 ntBASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 ASAH1-265ENST00000637922 2297 ntTSL 5 BASIC4.02□□□□□ -1.77
DEPDC4Q8N2C3 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 MIR539-201ENST00000365690 78 ntBASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 RNU6-1274P-201ENST00000384557 107 ntBASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 AC006461.1-201ENST00000412637 326 ntBASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 RPEP3-201ENST00000425462 676 ntBASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 MTND4LP9-201ENST00000427694 174 ntBASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 TRBV25OR9-2-201ENST00000438417 374 ntBASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 AL137159.1-201ENST00000452808 512 ntBASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 AC117454.1-201ENST00000491120 168 ntBASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 SNORA25.12-201ENST00000516202 82 ntBASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 MIR2114-201ENST00000516645 80 ntBASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 LINC02459-201ENST00000551761 474 ntTSL 3 BASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 AC127455.1-201ENST00000565496 145 ntBASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 MIR4715-201ENST00000584117 79 ntBASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 AC020914.4-201ENST00000597690 277 ntBASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 AL354798.1-201ENST00000622505 329 ntBASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 MAPK10-373ENST00000641983 6772 ntBASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
DEPDC4Q8N2C3 AC018555.1-201ENST00000567548 1980 ntBASIC4□□□□□ -1.77
DEPDC4Q8N2C3 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4□□□□□ -1.77
DEPDC4Q8N2C3 MLH1-212ENST00000455445 2296 ntTSL 2 BASIC4□□□□□ -1.77
DEPDC4Q8N2C3 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
DEPDC4Q8N2C3 RNA5SP205-201ENST00000364653 136 ntBASIC4□□□□□ -1.77
DEPDC4Q8N2C3 RNU6ATAC5P-201ENST00000388104 126 ntBASIC4□□□□□ -1.77
DEPDC4Q8N2C3 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC4□□□□□ -1.77
DEPDC4Q8N2C3 SNORD65B-201ENST00000459126 73 ntBASIC4□□□□□ -1.77
DEPDC4Q8N2C3 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC4□□□□□ -1.77
DEPDC4Q8N2C3 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC4□□□□□ -1.77
DEPDC4Q8N2C3 RNU6-948P-201ENST00000516374 107 ntBASIC4□□□□□ -1.77
DEPDC4Q8N2C3 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4□□□□□ -1.77
DEPDC4Q8N2C3 AC112693.2-201ENST00000556538 232 ntBASIC4□□□□□ -1.77
DEPDC4Q8N2C3 LARP7P3-201ENST00000579888 337 ntBASIC4□□□□□ -1.77
DEPDC4Q8N2C3 AC005972.2-201ENST00000604690 348 ntBASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms