Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC010266.2-201ENST00000564741 3255 ntBASIC4.61□□□□□ -1.67
COL9A1P20849 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL9A1P20849 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC4.61□□□□□ -1.67
COL9A1P20849 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
COL9A1P20849 Y_RNA.17-201ENST00000362433 111 ntBASIC4.61□□□□□ -1.67
COL9A1P20849 MIR128-1-201ENST00000384921 82 ntBASIC4.61□□□□□ -1.67
COL9A1P20849 MIR1255A-201ENST00000408338 113 ntBASIC4.61□□□□□ -1.67
COL9A1P20849 RPL30P4-201ENST00000429309 333 ntBASIC4.61□□□□□ -1.67
COL9A1P20849 RPS27P22-201ENST00000478056 241 ntBASIC4.61□□□□□ -1.67
COL9A1P20849 AC005921.1-201ENST00000510589 286 ntBASIC4.61□□□□□ -1.67
COL9A1P20849 RNU6-240P-201ENST00000516098 97 ntBASIC4.61□□□□□ -1.67
COL9A1P20849 CYCSP40-201ENST00000575927 294 ntBASIC4.61□□□□□ -1.67
COL9A1P20849 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.61□□□□□ -1.67
COL9A1P20849 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.61□□□□□ -1.67
COL9A1P20849 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC4.61□□□□□ -1.67
COL9A1P20849 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.61□□□□□ -1.67
COL9A1P20849 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC4.6□□□□□ -1.67
COL9A1P20849 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC4.6□□□□□ -1.67
COL9A1P20849 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.67
COL9A1P20849 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC4.6□□□□□ -1.67
COL9A1P20849 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
COL9A1P20849 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC4.6□□□□□ -1.67
COL9A1P20849 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL9A1P20849 SNORD61-201ENST00000384252 73 ntBASIC4.6□□□□□ -1.67
COL9A1P20849 RPL35AP15-201ENST00000468042 339 ntBASIC4.6□□□□□ -1.67
COL9A1P20849 RNU6-948P-201ENST00000516374 107 ntBASIC4.6□□□□□ -1.67
COL9A1P20849 Vault.1-201ENST00000516474 102 ntBASIC4.6□□□□□ -1.67
COL9A1P20849 RNY4P20-201ENST00000516678 93 ntBASIC4.6□□□□□ -1.67
COL9A1P20849 RN7SKP57-201ENST00000517248 293 ntBASIC4.6□□□□□ -1.67
COL9A1P20849 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC4.6□□□□□ -1.67
COL9A1P20849 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC4.6□□□□□ -1.67
COL9A1P20849 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL9A1P20849 AC010889.1-201ENST00000566193 2666 ntBASIC4.6□□□□□ -1.67
COL9A1P20849 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC4.6□□□□□ -1.67
COL9A1P20849 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC4.6□□□□□ -1.67
COL9A1P20849 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
COL9A1P20849 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC4.6□□□□□ -1.67
COL9A1P20849 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.6□□□□□ -1.67
COL9A1P20849 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
COL9A1P20849 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
COL9A1P20849 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC4.59□□□□□ -1.67
COL9A1P20849 OR7A5-201ENST00000322301 4216 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
COL9A1P20849 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC4.59□□□□□ -1.67
COL9A1P20849 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL9A1P20849 RNU4-36P-201ENST00000364294 144 ntBASIC4.59□□□□□ -1.67
COL9A1P20849 Y_RNA.242-201ENST00000364473 110 ntBASIC4.59□□□□□ -1.67
COL9A1P20849 Y_RNA.265-201ENST00000364677 108 ntBASIC4.59□□□□□ -1.67
COL9A1P20849 RNA5SP189-201ENST00000364920 115 ntBASIC4.59□□□□□ -1.67
COL9A1P20849 RNU6-1296P-201ENST00000383879 107 ntBASIC4.59□□□□□ -1.67
COL9A1P20849 HMGN2P31-201ENST00000432430 273 ntBASIC4.59□□□□□ -1.67
COL9A1P20849 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
COL9A1P20849 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC4.59□□□□□ -1.67
COL9A1P20849 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC4.59□□□□□ -1.67
COL9A1P20849 RNU6-830P-201ENST00000516353 107 ntBASIC4.59□□□□□ -1.67
COL9A1P20849 TVP23BP1-201ENST00000557500 617 ntBASIC4.59□□□□□ -1.67
COL9A1P20849 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC4.59□□□□□ -1.67
COL9A1P20849 U6.105-201ENST00000637379 88 ntBASIC4.59□□□□□ -1.67
COL9A1P20849 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
COL9A1P20849 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
COL9A1P20849 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
COL9A1P20849 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.59□□□□□ -1.68
COL9A1P20849 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
COL9A1P20849 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
COL9A1P20849 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
COL9A1P20849 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
COL9A1P20849 MFSD8-242ENST00000641690 4199 ntBASIC4.58□□□□□ -1.68
COL9A1P20849 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL9A1P20849 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
COL9A1P20849 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
COL9A1P20849 HEATR5A-203ENST00000543095 7840 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
COL9A1P20849 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.58□□□□□ -1.68
COL9A1P20849 AL022311.1-201ENST00000623726 19416 ntBASIC4.58□□□□□ -1.68
COL9A1P20849 Y_RNA.221-201ENST00000364248 96 ntBASIC4.58□□□□□ -1.68
COL9A1P20849 RNU6-242P-201ENST00000384359 107 ntBASIC4.58□□□□□ -1.68
COL9A1P20849 AC007738.1-201ENST00000413892 348 ntBASIC4.58□□□□□ -1.68
COL9A1P20849 RPS29P21-201ENST00000496272 170 ntBASIC4.58□□□□□ -1.68
COL9A1P20849 RNU6-521P-201ENST00000516663 105 ntBASIC4.58□□□□□ -1.68
COL9A1P20849 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.58□□□□□ -1.68
COL9A1P20849 FAM27D1-201ENST00000612308 341 ntBASIC4.58□□□□□ -1.68
COL9A1P20849 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
COL9A1P20849 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC4.58□□□□□ -1.68
COL9A1P20849 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC4.57□□□□□ -1.68
COL9A1P20849 AC093591.2-201ENST00000565254 3843 ntBASIC4.57□□□□□ -1.68
COL9A1P20849 AC046195.1-201ENST00000518973 4171 ntTSL 2 BASIC4.57□□□□□ -1.68
COL9A1P20849 RNU1-22P-201ENST00000363334 158 ntBASIC4.57□□□□□ -1.68
COL9A1P20849 Y_RNA.244-201ENST00000364484 109 ntBASIC4.57□□□□□ -1.68
COL9A1P20849 SNORD77.3-201ENST00000391113 65 ntBASIC4.57□□□□□ -1.68
COL9A1P20849 ATP6V0E1P1-201ENST00000412537 226 ntBASIC4.57□□□□□ -1.68
COL9A1P20849 AC104333.2-201ENST00000422630 192 ntBASIC4.57□□□□□ -1.68
COL9A1P20849 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.57□□□□□ -1.68
COL9A1P20849 RPL39P39-201ENST00000455840 151 ntBASIC4.57□□□□□ -1.68
COL9A1P20849 RN7SL807P-201ENST00000470923 297 ntBASIC4.57□□□□□ -1.68
COL9A1P20849 AC022137.1-201ENST00000483735 151 ntBASIC4.57□□□□□ -1.68
COL9A1P20849 MRPS17P9-201ENST00000511924 393 ntBASIC4.57□□□□□ -1.68
COL9A1P20849 SCARNA23-201ENST00000516060 130 ntBASIC4.57□□□□□ -1.68
COL9A1P20849 RNU6-1270P-201ENST00000517128 108 ntBASIC4.57□□□□□ -1.68
COL9A1P20849 AC079598.5-201ENST00000547460 117 ntBASIC4.57□□□□□ -1.68
COL9A1P20849 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC4.57□□□□□ -1.68
COL9A1P20849 IGLL4P-201ENST00000614590 133 ntBASIC4.57□□□□□ -1.68
COL9A1P20849 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms