Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 AC090096.1-201ENST00000489168 390 ntBASIC3.07□□□□□ -1.92
HPS3Q969F9 AC144568.1-201ENST00000520139 137 ntBASIC3.07□□□□□ -1.92
HPS3Q969F9 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC3.07□□□□□ -1.92
HPS3Q969F9 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC3.07□□□□□ -1.92
HPS3Q969F9 AC010928.2-201ENST00000588017 287 ntBASIC3.07□□□□□ -1.92
HPS3Q969F9 RPL12P50-201ENST00000603116 116 ntBASIC3.07□□□□□ -1.92
HPS3Q969F9 AL138963.2-201ENST00000605137 226 ntBASIC3.07□□□□□ -1.92
HPS3Q969F9 AC090517.3-201ENST00000625170 141 ntBASIC3.07□□□□□ -1.92
HPS3Q969F9 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC3.07□□□□□ -1.92
HPS3Q969F9 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.07□□□□□ -1.92
HPS3Q969F9 snoU2_19.1-201ENST00000362361 80 ntBASIC3.06□□□□□ -1.92
HPS3Q969F9 SNORD56.5-201ENST00000364281 72 ntBASIC3.06□□□□□ -1.92
HPS3Q969F9 RNU6-851P-201ENST00000384565 107 ntBASIC3.06□□□□□ -1.92
HPS3Q969F9 MIR190B-201ENST00000401119 79 ntBASIC3.06□□□□□ -1.92
HPS3Q969F9 MIR208B-201ENST00000401172 77 ntBASIC3.06□□□□□ -1.92
HPS3Q969F9 RPL19P1-201ENST00000411635 428 ntBASIC3.06□□□□□ -1.92
HPS3Q969F9 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.06□□□□□ -1.92
HPS3Q969F9 AC018865.2-201ENST00000423631 129 ntBASIC3.06□□□□□ -1.92
HPS3Q969F9 MTCO3P29-201ENST00000432119 779 ntBASIC3.06□□□□□ -1.92
HPS3Q969F9 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.06□□□□□ -1.92
HPS3Q969F9 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.06□□□□□ -1.92
HPS3Q969F9 RPL23AP70-201ENST00000483361 460 ntBASIC3.06□□□□□ -1.92
HPS3Q969F9 RN7SKP132-201ENST00000516001 208 ntBASIC3.06□□□□□ -1.92
HPS3Q969F9 AC091144.1-201ENST00000519573 138 ntBASIC3.06□□□□□ -1.92
HPS3Q969F9 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.06□□□□□ -1.92
HPS3Q969F9 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
HPS3Q969F9 AC069528.2-201ENST00000624849 1991 ntBASIC3.06□□□□□ -1.92
HPS3Q969F9 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.06□□□□□ -1.92
HPS3Q969F9 RNU6-461P-201ENST00000364195 107 ntBASIC3.05□□□□□ -1.92
HPS3Q969F9 RNU6-541P-201ENST00000384709 110 ntBASIC3.05□□□□□ -1.92
HPS3Q969F9 MIR627-201ENST00000384979 97 ntBASIC3.05□□□□□ -1.92
HPS3Q969F9 HMGN2P35-201ENST00000412164 270 ntBASIC3.05□□□□□ -1.92
HPS3Q969F9 RPS26P42-201ENST00000413485 326 ntBASIC3.05□□□□□ -1.92
HPS3Q969F9 AC112220.1-201ENST00000434628 355 ntBASIC3.05□□□□□ -1.92
HPS3Q969F9 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC3.05□□□□□ -1.92
HPS3Q969F9 AL353752.1-201ENST00000454946 260 ntBASIC3.05□□□□□ -1.92
HPS3Q969F9 snoU13.6-201ENST00000458785 104 ntBASIC3.05□□□□□ -1.92
HPS3Q969F9 CKS1BP2-201ENST00000497342 240 ntBASIC3.05□□□□□ -1.92
HPS3Q969F9 AC105758.1-201ENST00000506038 399 ntBASIC3.05□□□□□ -1.92
HPS3Q969F9 RNU6-988P-201ENST00000519081 107 ntBASIC3.05□□□□□ -1.92
HPS3Q969F9 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC3.05□□□□□ -1.92
HPS3Q969F9 AC107016.2-201ENST00000547968 190 ntBASIC3.05□□□□□ -1.92
HPS3Q969F9 MIR3171-201ENST00000584270 74 ntBASIC3.05□□□□□ -1.92
HPS3Q969F9 SNRPGP17-201ENST00000603780 214 ntBASIC3.05□□□□□ -1.92
HPS3Q969F9 MIR1244-1-201ENST00000612829 85 ntBASIC3.05□□□□□ -1.92
HPS3Q969F9 MIR5739-201ENST00000619803 80 ntBASIC3.05□□□□□ -1.92
HPS3Q969F9 MIR1244-3-201ENST00000635744 85 ntBASIC3.05□□□□□ -1.92
HPS3Q969F9 MIR1244-2-201ENST00000636449 85 ntBASIC3.05□□□□□ -1.92
HPS3Q969F9 MIR1244-4-202ENST00000636813 85 ntBASIC3.05□□□□□ -1.92
HPS3Q969F9 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
HPS3Q969F9 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.05□□□□□ -1.92
HPS3Q969F9 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
HPS3Q969F9 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.04□□□□□ -1.92
HPS3Q969F9 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
HPS3Q969F9 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
HPS3Q969F9 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
HPS3Q969F9 Y_RNA.202-201ENST00000364083 110 ntBASIC3.04□□□□□ -1.92
HPS3Q969F9 RNU1-115P-201ENST00000365329 160 ntBASIC3.04□□□□□ -1.92
HPS3Q969F9 RNU6-17P-201ENST00000384245 107 ntBASIC3.04□□□□□ -1.92
HPS3Q969F9 RNU6-18P-201ENST00000384527 107 ntBASIC3.04□□□□□ -1.92
HPS3Q969F9 RNU6-1093P-201ENST00000391194 107 ntBASIC3.04□□□□□ -1.92
HPS3Q969F9 Y_RNA.605-201ENST00000410577 105 ntBASIC3.04□□□□□ -1.92
HPS3Q969F9 RNU2-25P-201ENST00000411041 191 ntBASIC3.04□□□□□ -1.92
HPS3Q969F9 HMGB3P2-201ENST00000411913 584 ntBASIC3.04□□□□□ -1.92
HPS3Q969F9 MTCYBP6-201ENST00000441810 138 ntBASIC3.04□□□□□ -1.92
HPS3Q969F9 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC3.04□□□□□ -1.92
HPS3Q969F9 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC3.04□□□□□ -1.92
HPS3Q969F9 TOMM22P6-201ENST00000465035 409 ntBASIC3.04□□□□□ -1.92
HPS3Q969F9 AC145146.1-201ENST00000496370 254 ntBASIC3.04□□□□□ -1.92
HPS3Q969F9 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.04□□□□□ -1.92
HPS3Q969F9 RNA5SP76-201ENST00000516277 87 ntBASIC3.04□□□□□ -1.92
HPS3Q969F9 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC3.04□□□□□ -1.92
HPS3Q969F9 AC020661.2-201ENST00000560114 134 ntBASIC3.04□□□□□ -1.92
HPS3Q969F9 MIR3117-201ENST00000584034 78 ntBASIC3.04□□□□□ -1.92
HPS3Q969F9 AL355802.3-201ENST00000607571 545 ntBASIC3.04□□□□□ -1.92
HPS3Q969F9 AC005520.5-201ENST00000613926 164 ntBASIC3.04□□□□□ -1.92
HPS3Q969F9 AC008121.3-201ENST00000618726 433 ntBASIC3.04□□□□□ -1.92
HPS3Q969F9 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
HPS3Q969F9 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.04□□□□□ -1.92
HPS3Q969F9 MAPK10-266ENST00000641066 6555 ntBASIC3.03□□□□□ -1.92
HPS3Q969F9 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.03□□□□□ -1.92
HPS3Q969F9 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
HPS3Q969F9 Y_RNA.28-201ENST00000362554 111 ntBASIC3.03□□□□□ -1.92
HPS3Q969F9 RNU4-15P-201ENST00000362613 141 ntBASIC3.03□□□□□ -1.92
HPS3Q969F9 AL356057.3-201ENST00000402607 340 ntBASIC3.03□□□□□ -1.92
HPS3Q969F9 AL138827.1-201ENST00000402666 306 ntBASIC3.03□□□□□ -1.92
HPS3Q969F9 FO393413.1-201ENST00000402892 195 ntBASIC3.03□□□□□ -1.92
HPS3Q969F9 MRPS18CP6-201ENST00000423587 223 ntBASIC3.03□□□□□ -1.92
HPS3Q969F9 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.03□□□□□ -1.92
HPS3Q969F9 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.03□□□□□ -1.92
HPS3Q969F9 UBBP3-201ENST00000445497 241 ntBASIC3.03□□□□□ -1.92
HPS3Q969F9 CYP2C59P-201ENST00000457790 269 ntBASIC3.03□□□□□ -1.92
HPS3Q969F9 RNU7-87P-201ENST00000459343 62 ntBASIC3.03□□□□□ -1.92
HPS3Q969F9 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.03□□□□□ -1.92
HPS3Q969F9 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.03□□□□□ -1.92
HPS3Q969F9 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC3.03□□□□□ -1.92
HPS3Q969F9 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.03□□□□□ -1.92
HPS3Q969F9 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.03□□□□□ -1.92
HPS3Q969F9 AL356280.1-201ENST00000603614 379 ntBASIC3.03□□□□□ -1.92
HPS3Q969F9 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.03□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 112.2 ms