Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 SNORD31B-201ENST00000364977 69 ntBASIC2.94□□□□□ -1.94
CLRN3Q8NCR9 Y_RNA.396-201ENST00000383949 103 ntBASIC2.94□□□□□ -1.94
CLRN3Q8NCR9 SNORA67.2-201ENST00000384300 149 ntBASIC2.94□□□□□ -1.94
CLRN3Q8NCR9 MIR1283-1-201ENST00000408494 87 ntBASIC2.94□□□□□ -1.94
CLRN3Q8NCR9 RNA5SP475-201ENST00000410568 110 ntBASIC2.94□□□□□ -1.94
CLRN3Q8NCR9 RNA5SP504-201ENST00000410676 117 ntBASIC2.94□□□□□ -1.94
CLRN3Q8NCR9 AL356387.2-201ENST00000422272 243 ntBASIC2.94□□□□□ -1.94
CLRN3Q8NCR9 snoU13.1-201ENST00000459157 104 ntBASIC2.94□□□□□ -1.94
CLRN3Q8NCR9 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.94□□□□□ -1.94
CLRN3Q8NCR9 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.94□□□□□ -1.94
CLRN3Q8NCR9 Y_RNA.668-201ENST00000516233 93 ntBASIC2.94□□□□□ -1.94
CLRN3Q8NCR9 RNU7-110P-201ENST00000516891 62 ntBASIC2.94□□□□□ -1.94
CLRN3Q8NCR9 RNU6-570P-201ENST00000517051 105 ntBASIC2.94□□□□□ -1.94
CLRN3Q8NCR9 SNORA31.26-201ENST00000517250 137 ntBASIC2.94□□□□□ -1.94
CLRN3Q8NCR9 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC2.94□□□□□ -1.94
CLRN3Q8NCR9 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.94□□□□□ -1.94
CLRN3Q8NCR9 MIR4753-201ENST00000585119 83 ntBASIC2.94□□□□□ -1.94
CLRN3Q8NCR9 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC2.94□□□□□ -1.94
CLRN3Q8NCR9 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
CLRN3Q8NCR9 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
CLRN3Q8NCR9 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
CLRN3Q8NCR9 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 RNU4-90P-201ENST00000362773 141 ntBASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 RNVU1-6-201ENST00000364688 164 ntBASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 SNORD87-201ENST00000364849 89 ntBASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 RNU6-472P-201ENST00000384299 107 ntBASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 MIR129-1-201ENST00000384972 72 ntBASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 RNU2-20P-201ENST00000410425 191 ntBASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 Y_RNA.602-201ENST00000410535 92 ntBASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 RNU2-25P-201ENST00000411041 191 ntBASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 RPL23AP36-201ENST00000413895 458 ntBASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 UBBP3-201ENST00000445497 241 ntBASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 Z75741.1-201ENST00000446793 314 ntBASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 SRIP1-201ENST00000489235 288 ntBASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 RN7SL810P-201ENST00000493031 276 ntBASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 RNU6-965P-201ENST00000516721 96 ntBASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 RN7SKP40-201ENST00000517211 242 ntBASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 RNA5SP179-201ENST00000517284 121 ntBASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 AC113403.1-201ENST00000604910 193 ntBASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 AC073657.2-201ENST00000605661 303 ntBASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 U4atac.1-201ENST00000618345 95 ntBASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.93□□□□□ -1.94
CLRN3Q8NCR9 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
CLRN3Q8NCR9 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC2.92□□□□□ -1.94
CLRN3Q8NCR9 Y_RNA.84-201ENST00000363011 104 ntBASIC2.92□□□□□ -1.94
CLRN3Q8NCR9 RNA5SP443-201ENST00000363083 132 ntBASIC2.92□□□□□ -1.94
CLRN3Q8NCR9 RNA5SP125-201ENST00000364843 120 ntBASIC2.92□□□□□ -1.94
CLRN3Q8NCR9 RNU6-1175P-201ENST00000365200 107 ntBASIC2.92□□□□□ -1.94
CLRN3Q8NCR9 RNU6-438P-201ENST00000365561 103 ntBASIC2.92□□□□□ -1.94
CLRN3Q8NCR9 RN7SKP58-201ENST00000411010 305 ntBASIC2.92□□□□□ -1.94
CLRN3Q8NCR9 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC2.92□□□□□ -1.94
CLRN3Q8NCR9 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC2.92□□□□□ -1.94
CLRN3Q8NCR9 NDUFB1P1-201ENST00000435191 180 ntBASIC2.92□□□□□ -1.94
CLRN3Q8NCR9 AC104389.3-201ENST00000445629 235 ntBASIC2.92□□□□□ -1.94
CLRN3Q8NCR9 RN7SL354P-201ENST00000469282 294 ntBASIC2.92□□□□□ -1.94
CLRN3Q8NCR9 RNA5SP519-201ENST00000516480 119 ntBASIC2.92□□□□□ -1.94
CLRN3Q8NCR9 MIR2276-201ENST00000516886 89 ntBASIC2.92□□□□□ -1.94
CLRN3Q8NCR9 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.92□□□□□ -1.94
CLRN3Q8NCR9 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.92□□□□□ -1.94
CLRN3Q8NCR9 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.92□□□□□ -1.94
CLRN3Q8NCR9 AC006006.1-201ENST00000603082 144 ntBASIC2.92□□□□□ -1.94
CLRN3Q8NCR9 AC062037.2-201ENST00000610137 73 ntBASIC2.92□□□□□ -1.94
CLRN3Q8NCR9 TTC21B-AS1-201ENST00000440322 2260 ntTSL 4 BASIC2.92□□□□□ -1.94
CLRN3Q8NCR9 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC2.92□□□□□ -1.94
CLRN3Q8NCR9 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.91□□□□□ -1.94
CLRN3Q8NCR9 AC093831.2-201ENST00000624393 3427 ntBASIC2.91□□□□□ -1.94
CLRN3Q8NCR9 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC2.91□□□□□ -1.94
CLRN3Q8NCR9 RNA5SP197-201ENST00000363357 119 ntBASIC2.91□□□□□ -1.94
CLRN3Q8NCR9 RNA5SP42-201ENST00000364278 115 ntBASIC2.91□□□□□ -1.94
CLRN3Q8NCR9 Y_RNA.518-201ENST00000384552 113 ntBASIC2.91□□□□□ -1.94
CLRN3Q8NCR9 SNORA26.7-201ENST00000391288 122 ntBASIC2.91□□□□□ -1.94
CLRN3Q8NCR9 RNU6-1203P-201ENST00000410703 110 ntBASIC2.91□□□□□ -1.94
CLRN3Q8NCR9 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC2.91□□□□□ -1.94
CLRN3Q8NCR9 AC005042.3-201ENST00000453230 174 ntBASIC2.91□□□□□ -1.94
CLRN3Q8NCR9 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC2.91□□□□□ -1.94
CLRN3Q8NCR9 HMGN2P9-201ENST00000476875 229 ntBASIC2.91□□□□□ -1.94
CLRN3Q8NCR9 AC098869.1-201ENST00000481627 292 ntBASIC2.91□□□□□ -1.94
CLRN3Q8NCR9 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC2.91□□□□□ -1.94
CLRN3Q8NCR9 AC104619.4-201ENST00000510773 249 ntBASIC2.91□□□□□ -1.94
CLRN3Q8NCR9 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.91□□□□□ -1.94
CLRN3Q8NCR9 RNU6-496P-201ENST00000516145 99 ntBASIC2.91□□□□□ -1.94
CLRN3Q8NCR9 RNA5SP208-201ENST00000516156 78 ntBASIC2.91□□□□□ -1.94
CLRN3Q8NCR9 RNA5SP490-201ENST00000517141 136 ntBASIC2.91□□□□□ -1.94
CLRN3Q8NCR9 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC2.91□□□□□ -1.94
CLRN3Q8NCR9 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.91□□□□□ -1.94
CLRN3Q8NCR9 AC006380.1-201ENST00000603598 186 ntBASIC2.91□□□□□ -1.94
CLRN3Q8NCR9 AC022441.3-201ENST00000605737 136 ntBASIC2.91□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms