Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.43□□□□□ -2.18
RFX3P48380 AC087683.1-201ENST00000591187 441 ntBASIC1.43□□□□□ -2.18
RFX3P48380 RNU6-85P-201ENST00000605989 107 ntBASIC1.43□□□□□ -2.18
RFX3P48380 uc_338.5-201ENST00000611839 155 ntBASIC1.43□□□□□ -2.18
RFX3P48380 AL136221.1-201ENST00000621449 509 ntBASIC1.43□□□□□ -2.18
RFX3P48380 LINC02555-201ENST00000563933 1951 ntBASIC1.43□□□□□ -2.18
RFX3P48380 MIR340-201ENST00000362125 95 ntBASIC1.42□□□□□ -2.18
RFX3P48380 RNU6-661P-201ENST00000362409 107 ntBASIC1.42□□□□□ -2.18
RFX3P48380 U3.9-201ENST00000363823 204 ntBASIC1.42□□□□□ -2.18
RFX3P48380 RNU6-82P-201ENST00000363970 107 ntBASIC1.42□□□□□ -2.18
RFX3P48380 Y_RNA.255-201ENST00000364581 97 ntBASIC1.42□□□□□ -2.18
RFX3P48380 Y_RNA.296-201ENST00000364930 108 ntBASIC1.42□□□□□ -2.18
RFX3P48380 Y_RNA.338-201ENST00000365320 114 ntBASIC1.42□□□□□ -2.18
RFX3P48380 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.42□□□□□ -2.18
RFX3P48380 RNY3P9-201ENST00000384727 106 ntBASIC1.42□□□□□ -2.18
RFX3P48380 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
RFX3P48380 Y_RNA.582-201ENST00000391023 95 ntBASIC1.42□□□□□ -2.18
RFX3P48380 RNA5SP213-201ENST00000391031 106 ntBASIC1.42□□□□□ -2.18
RFX3P48380 SNORA67.6-201ENST00000391093 99 ntBASIC1.42□□□□□ -2.18
RFX3P48380 AF228730.1-201ENST00000397972 663 ntBASIC1.42□□□□□ -2.18
RFX3P48380 AL606923.1-201ENST00000406616 190 ntBASIC1.42□□□□□ -2.18
RFX3P48380 AP000275.1-201ENST00000411943 390 ntBASIC1.42□□□□□ -2.18
RFX3P48380 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.42□□□□□ -2.18
RFX3P48380 CDK8P2-201ENST00000415020 547 ntBASIC1.42□□□□□ -2.18
RFX3P48380 NCOR1P3-201ENST00000420479 303 ntBASIC1.42□□□□□ -2.18
RFX3P48380 AC112492.4-201ENST00000456549 352 ntBASIC1.42□□□□□ -2.18
RFX3P48380 AC008628.2-201ENST00000502605 298 ntBASIC1.42□□□□□ -2.18
RFX3P48380 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC1.42□□□□□ -2.18
RFX3P48380 AC108078.1-201ENST00000508073 725 ntBASIC1.42□□□□□ -2.18
RFX3P48380 AC108729.3-201ENST00000513484 108 ntBASIC1.42□□□□□ -2.18
RFX3P48380 Y_RNA.675-201ENST00000516389 149 ntBASIC1.42□□□□□ -2.18
RFX3P48380 SNORA31.16-201ENST00000516773 139 ntBASIC1.42□□□□□ -2.18
RFX3P48380 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.42□□□□□ -2.18
RFX3P48380 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.42□□□□□ -2.18
RFX3P48380 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC1.42□□□□□ -2.18
RFX3P48380 CYP4A27P-201ENST00000567218 190 ntBASIC1.42□□□□□ -2.18
RFX3P48380 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.42□□□□□ -2.18
RFX3P48380 AC110760.3-201ENST00000598794 467 ntBASIC1.42□□□□□ -2.18
RFX3P48380 AC007684.1-201ENST00000609671 477 ntBASIC1.42□□□□□ -2.18
RFX3P48380 AL354950.2-201ENST00000617939 290 ntBASIC1.42□□□□□ -2.18
RFX3P48380 AC245060.5-201ENST00000610778 3293 ntBASIC1.42□□□□□ -2.18
RFX3P48380 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.42□□□□□ -2.18
RFX3P48380 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
RFX3P48380 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.41□□□□□ -2.18
RFX3P48380 Y_RNA.1-201ENST00000352915 104 ntBASIC1.41□□□□□ -2.18
RFX3P48380 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
RFX3P48380 RNU6-1158P-201ENST00000391167 107 ntBASIC1.41□□□□□ -2.18
RFX3P48380 AC123900.1-201ENST00000420390 96 ntBASIC1.41□□□□□ -2.18
RFX3P48380 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC1.41□□□□□ -2.18
RFX3P48380 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.41□□□□□ -2.18
RFX3P48380 AC108667.1-201ENST00000428618 249 ntBASIC1.41□□□□□ -2.18
RFX3P48380 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.41□□□□□ -2.18
RFX3P48380 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.41□□□□□ -2.18
RFX3P48380 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC1.41□□□□□ -2.18
RFX3P48380 RPL31P3-201ENST00000458430 332 ntBASIC1.41□□□□□ -2.18
RFX3P48380 AC114801.2-201ENST00000503825 781 ntBASIC1.41□□□□□ -2.18
RFX3P48380 AC010424.1-201ENST00000506336 297 ntBASIC1.41□□□□□ -2.18
RFX3P48380 AC091133.4-201ENST00000511142 308 ntBASIC1.41□□□□□ -2.18
RFX3P48380 Y_RNA.676-201ENST00000516393 96 ntBASIC1.41□□□□□ -2.18
RFX3P48380 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.41□□□□□ -2.18
RFX3P48380 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.41□□□□□ -2.18
RFX3P48380 MIR4424-201ENST00000585257 86 ntBASIC1.41□□□□□ -2.18
RFX3P48380 AC005786.1-201ENST00000588553 154 ntBASIC1.41□□□□□ -2.18
RFX3P48380 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.41□□□□□ -2.18
RFX3P48380 snoU13.31-201ENST00000607291 104 ntBASIC1.41□□□□□ -2.18
RFX3P48380 AC017083.3-201ENST00000609955 700 ntBASIC1.41□□□□□ -2.18
RFX3P48380 HULC.1-201ENST00000612720 240 ntBASIC1.41□□□□□ -2.18
RFX3P48380 PCGEM1.1-201ENST00000613431 131 ntBASIC1.41□□□□□ -2.18
RFX3P48380 AC005520.5-201ENST00000613926 164 ntBASIC1.41□□□□□ -2.18
RFX3P48380 MIR8074-201ENST00000615081 81 ntBASIC1.41□□□□□ -2.18
RFX3P48380 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.41□□□□□ -2.18
RFX3P48380 AP000648.3-201ENST00000623539 4507 ntBASIC1.41□□□□□ -2.18
RFX3P48380 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.18
RFX3P48380 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.4□□□□□ -2.18
RFX3P48380 MIR378A-201ENST00000362177 66 ntBASIC1.4□□□□□ -2.19
RFX3P48380 RNU6-112P-201ENST00000363599 104 ntBASIC1.4□□□□□ -2.19
RFX3P48380 RNU1-42P-201ENST00000364033 160 ntBASIC1.4□□□□□ -2.19
RFX3P48380 RPL23AP36-201ENST00000413895 458 ntBASIC1.4□□□□□ -2.19
RFX3P48380 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC1.4□□□□□ -2.19
RFX3P48380 MTCO3P46-201ENST00000425787 232 ntBASIC1.4□□□□□ -2.19
RFX3P48380 MTATP6P17-201ENST00000431030 672 ntBASIC1.4□□□□□ -2.19
RFX3P48380 AL121601.2-201ENST00000438019 707 ntBASIC1.4□□□□□ -2.19
RFX3P48380 MTND1P26-201ENST00000440488 538 ntBASIC1.4□□□□□ -2.19
RFX3P48380 MTCO1P19-201ENST00000443487 500 ntBASIC1.4□□□□□ -2.19
RFX3P48380 MTCO3P38-201ENST00000468910 766 ntBASIC1.4□□□□□ -2.19
RFX3P48380 ATP5EP1-201ENST00000510257 156 ntBASIC1.4□□□□□ -2.19
RFX3P48380 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC1.4□□□□□ -2.19
RFX3P48380 SNORA14.1-201ENST00000516113 141 ntBASIC1.4□□□□□ -2.19
RFX3P48380 SNORA40.12-201ENST00000516329 111 ntBASIC1.4□□□□□ -2.19
RFX3P48380 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.4□□□□□ -2.19
RFX3P48380 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.4□□□□□ -2.19
RFX3P48380 AC016256.1-201ENST00000547971 354 ntBASIC1.4□□□□□ -2.19
RFX3P48380 EIF4A1P12-201ENST00000551910 141 ntBASIC1.4□□□□□ -2.19
RFX3P48380 AC109446.1-201ENST00000566172 220 ntBASIC1.4□□□□□ -2.19
RFX3P48380 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.4□□□□□ -2.19
RFX3P48380 MIR5583-1-201ENST00000580941 59 ntBASIC1.4□□□□□ -2.19
RFX3P48380 AC119751.7-201ENST00000600494 245 ntBASIC1.4□□□□□ -2.19
RFX3P48380 AC078795.3-201ENST00000602913 472 ntBASIC1.4□□□□□ -2.19
RFX3P48380 AC009509.4-201ENST00000619202 509 ntBASIC1.4□□□□□ -2.19
RFX3P48380 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 113.6 ms