Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC007494.3-201ENST00000624660 743 ntBASIC1.24□□□□□ -2.21
BRCA1P38398 Y_RNA.22-201ENST00000362492 102 ntBASIC1.24□□□□□ -2.21
BRCA1P38398 RNU6-862P-201ENST00000362804 105 ntBASIC1.24□□□□□ -2.21
BRCA1P38398 RNU6-393P-201ENST00000384475 107 ntBASIC1.24□□□□□ -2.21
BRCA1P38398 AL031577.2-201ENST00000404133 280 ntBASIC1.24□□□□□ -2.21
BRCA1P38398 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC1.24□□□□□ -2.21
BRCA1P38398 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.24□□□□□ -2.21
BRCA1P38398 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.24□□□□□ -2.21
BRCA1P38398 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC1.24□□□□□ -2.21
BRCA1P38398 NAF1-205ENST00000509434 385 ntTSL 3 BASIC1.24□□□□□ -2.21
BRCA1P38398 RNU6-1129P-201ENST00000515964 104 ntBASIC1.24□□□□□ -2.21
BRCA1P38398 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.24□□□□□ -2.21
BRCA1P38398 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC1.24□□□□□ -2.21
BRCA1P38398 AL391840.1-201ENST00000571144 367 ntBASIC1.24□□□□□ -2.21
BRCA1P38398 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC1.24□□□□□ -2.21
BRCA1P38398 AC008250.2-201ENST00000615261 205 ntBASIC1.24□□□□□ -2.21
BRCA1P38398 AC072046.2-201ENST00000618366 268 ntBASIC1.24□□□□□ -2.21
BRCA1P38398 MIR330-201ENST00000362196 94 ntBASIC1.23□□□□□ -2.21
BRCA1P38398 FGFR1OP2P1-201ENST00000395943 500 ntBASIC1.23□□□□□ -2.21
BRCA1P38398 RNA5SP100-201ENST00000410903 110 ntBASIC1.23□□□□□ -2.21
BRCA1P38398 RNA5SP59-201ENST00000410922 110 ntBASIC1.23□□□□□ -2.21
BRCA1P38398 AC013410.2-201ENST00000422627 201 ntBASIC1.23□□□□□ -2.21
BRCA1P38398 AC139712.2-201ENST00000424302 339 ntBASIC1.23□□□□□ -2.21
BRCA1P38398 USP9YP12-201ENST00000450481 570 ntBASIC1.23□□□□□ -2.21
BRCA1P38398 GMFBP1-201ENST00000467831 427 ntBASIC1.23□□□□□ -2.21
BRCA1P38398 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC1.23□□□□□ -2.21
BRCA1P38398 RNU5F-4P-201ENST00000516581 114 ntBASIC1.23□□□□□ -2.21
BRCA1P38398 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.23□□□□□ -2.21
BRCA1P38398 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC1.23□□□□□ -2.21
BRCA1P38398 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.23□□□□□ -2.21
BRCA1P38398 AL512605.2-201ENST00000592972 256 ntBASIC1.23□□□□□ -2.21
BRCA1P38398 SNORD114-21-201ENST00000606412 72 ntBASIC1.23□□□□□ -2.21
BRCA1P38398 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.23□□□□□ -2.21
BRCA1P38398 AC005520.5-201ENST00000613926 164 ntBASIC1.23□□□□□ -2.21
BRCA1P38398 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.23□□□□□ -2.21
BRCA1P38398 AC010487.4-201ENST00000637027 61 ntBASIC1.23□□□□□ -2.21
BRCA1P38398 AC099654.13-201ENST00000639774 207 ntBASIC1.23□□□□□ -2.21
BRCA1P38398 AC092268.1-201ENST00000342691 405 ntBASIC1.22□□□□□ -2.21
BRCA1P38398 RNU4-15P-201ENST00000362613 141 ntBASIC1.22□□□□□ -2.21
BRCA1P38398 RNA5SP457-201ENST00000363657 124 ntBASIC1.22□□□□□ -2.21
BRCA1P38398 RNU6-169P-201ENST00000365336 107 ntBASIC1.22□□□□□ -2.21
BRCA1P38398 RNU6-378P-201ENST00000384324 107 ntBASIC1.22□□□□□ -2.21
BRCA1P38398 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
BRCA1P38398 UBE2D3P4-201ENST00000441973 436 ntBASIC1.22□□□□□ -2.21
BRCA1P38398 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.22□□□□□ -2.21
BRCA1P38398 RNU6-1146P-201ENST00000516282 102 ntBASIC1.22□□□□□ -2.21
BRCA1P38398 RNU6-1178P-201ENST00000516674 107 ntBASIC1.22□□□□□ -2.21
BRCA1P38398 RNU6-567P-201ENST00000516746 107 ntBASIC1.22□□□□□ -2.21
BRCA1P38398 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.22□□□□□ -2.21
BRCA1P38398 AC009094.1-201ENST00000564443 426 ntBASIC1.22□□□□□ -2.21
BRCA1P38398 RPL17P51-201ENST00000605218 238 ntBASIC1.22□□□□□ -2.21
BRCA1P38398 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.22□□□□□ -2.21
BRCA1P38398 MIR6857-201ENST00000613267 93 ntBASIC1.22□□□□□ -2.21
BRCA1P38398 AC091304.6-201ENST00000619761 202 ntBASIC1.22□□□□□ -2.21
BRCA1P38398 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.22□□□□□ -2.21
BRCA1P38398 MIR216A-201ENST00000385063 110 ntBASIC1.22□□□□□ -2.21
BRCA1P38398 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC1.22□□□□□ -2.21
BRCA1P38398 RPL23AP95-201ENST00000426806 265 ntBASIC1.22□□□□□ -2.21
BRCA1P38398 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC1.22□□□□□ -2.21
BRCA1P38398 AC002486.1-201ENST00000435098 391 ntBASIC1.22□□□□□ -2.21
BRCA1P38398 HMGN1P13-201ENST00000505795 138 ntBASIC1.22□□□□□ -2.21
BRCA1P38398 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC1.22□□□□□ -2.21
BRCA1P38398 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.22□□□□□ -2.21
BRCA1P38398 SNORA25.17-201ENST00000517184 124 ntBASIC1.22□□□□□ -2.21
BRCA1P38398 AC069113.1-201ENST00000517763 267 ntBASIC1.22□□□□□ -2.21
BRCA1P38398 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.22□□□□□ -2.21
BRCA1P38398 HSPE1P4-201ENST00000550617 308 ntBASIC1.22□□□□□ -2.21
BRCA1P38398 CYP4A27P-201ENST00000567218 190 ntBASIC1.22□□□□□ -2.21
BRCA1P38398 MTCYBP33-201ENST00000575007 1130 ntBASIC1.22□□□□□ -2.21
BRCA1P38398 AC091135.1-201ENST00000585943 307 ntBASIC1.22□□□□□ -2.21
BRCA1P38398 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.22□□□□□ -2.21
BRCA1P38398 SNORD114-23-201ENST00000363536 72 ntBASIC1.21□□□□□ -2.22
BRCA1P38398 RNU6-1164P-201ENST00000364428 107 ntBASIC1.21□□□□□ -2.22
BRCA1P38398 RNU4-48P-201ENST00000365559 182 ntBASIC1.21□□□□□ -2.22
BRCA1P38398 AC068050.1-201ENST00000394891 380 ntBASIC1.21□□□□□ -2.22
BRCA1P38398 RNU6-195P-201ENST00000411352 109 ntBASIC1.21□□□□□ -2.22
BRCA1P38398 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.21□□□□□ -2.22
BRCA1P38398 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.21□□□□□ -2.22
BRCA1P38398 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.21□□□□□ -2.22
BRCA1P38398 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.21□□□□□ -2.22
BRCA1P38398 RNU1-131P-201ENST00000458943 161 ntBASIC1.21□□□□□ -2.22
BRCA1P38398 AP001372.4-201ENST00000524889 472 ntBASIC1.21□□□□□ -2.22
BRCA1P38398 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC1.21□□□□□ -2.22
BRCA1P38398 AC104458.1-201ENST00000608243 463 ntBASIC1.21□□□□□ -2.22
BRCA1P38398 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.21□□□□□ -2.22
BRCA1P38398 SNORD115-7-201ENST00000365306 82 ntBASIC1.2□□□□□ -2.22
BRCA1P38398 RNU6-1274P-201ENST00000384557 107 ntBASIC1.2□□□□□ -2.22
BRCA1P38398 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.2□□□□□ -2.22
BRCA1P38398 ZNF114P1-201ENST00000453500 292 ntBASIC1.2□□□□□ -2.22
BRCA1P38398 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC1.2□□□□□ -2.22
BRCA1P38398 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC1.2□□□□□ -2.22
BRCA1P38398 MIR4775-201ENST00000581168 75 ntBASIC1.2□□□□□ -2.22
BRCA1P38398 AC012507.3-201ENST00000603556 477 ntBASIC1.2□□□□□ -2.22
BRCA1P38398 AC091805.2-201ENST00000603848 235 ntBASIC1.2□□□□□ -2.22
BRCA1P38398 CLPTM1LP1-201ENST00000604519 484 ntBASIC1.2□□□□□ -2.22
BRCA1P38398 AC027449.1-201ENST00000608890 407 ntBASIC1.2□□□□□ -2.22
BRCA1P38398 AL050303.3-201ENST00000613704 284 ntBASIC1.2□□□□□ -2.22
BRCA1P38398 AC091931.1-201ENST00000623488 728 ntBASIC1.2□□□□□ -2.22
BRCA1P38398 ANKRD20A17P-201ENST00000511745 1330 ntBASIC1.2□□□□□ -2.22
BRCA1P38398 Y_RNA.251-201ENST00000364551 99 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms