Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AP001486.2-201ENST00000561652 5113 ntBASIC4.01□□□□□ -1.77
MSX1P28360 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4□□□□□ -1.77
MSX1P28360 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
MSX1P28360 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
MSX1P28360 AC069528.2-201ENST00000624849 1991 ntBASIC4□□□□□ -1.77
MSX1P28360 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC4□□□□□ -1.77
MSX1P28360 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
MSX1P28360 RNU6-1210P-201ENST00000363775 107 ntBASIC4□□□□□ -1.77
MSX1P28360 RNU6-1080P-201ENST00000383982 107 ntBASIC4□□□□□ -1.77
MSX1P28360 RN7SL98P-201ENST00000462271 300 ntBASIC4□□□□□ -1.77
MSX1P28360 RPL36AP21-201ENST00000490372 323 ntBASIC4□□□□□ -1.77
MSX1P28360 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC4□□□□□ -1.77
MSX1P28360 RNU4ATAC17P-201ENST00000517272 120 ntBASIC4□□□□□ -1.77
MSX1P28360 CYCSP29-201ENST00000533731 318 ntBASIC4□□□□□ -1.77
MSX1P28360 TRAV8-5-201ENST00000537369 341 ntBASIC4□□□□□ -1.77
MSX1P28360 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC4□□□□□ -1.77
MSX1P28360 AC113403.1-201ENST00000604910 193 ntBASIC4□□□□□ -1.77
MSX1P28360 RPL17P51-201ENST00000605218 238 ntBASIC4□□□□□ -1.77
MSX1P28360 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4□□□□□ -1.77
MSX1P28360 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC4□□□□□ -1.77
MSX1P28360 SLC25A17-202ENST00000402844 2405 ntTSL 2 BASIC4□□□□□ -1.77
MSX1P28360 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
MSX1P28360 AL159152.1-201ENST00000635019 2587 ntBASIC4□□□□□ -1.77
MSX1P28360 Z82217.1-201ENST00000625157 8149 ntBASIC4□□□□□ -1.77
MSX1P28360 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC3.99□□□□□ -1.77
MSX1P28360 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.99□□□□□ -1.77
MSX1P28360 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC3.99□□□□□ -1.77
MSX1P28360 RXFP1-201ENST00000307765 3842 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
MSX1P28360 RNU6-655P-201ENST00000362858 107 ntBASIC3.99□□□□□ -1.77
MSX1P28360 RNU6-674P-201ENST00000363831 107 ntBASIC3.99□□□□□ -1.77
MSX1P28360 RNA5SP175-201ENST00000364275 119 ntBASIC3.99□□□□□ -1.77
MSX1P28360 SNORD58C-201ENST00000365223 64 ntBASIC3.99□□□□□ -1.77
MSX1P28360 RNA5SP366-201ENST00000365454 123 ntBASIC3.99□□□□□ -1.77
MSX1P28360 Y_RNA.432-201ENST00000384087 111 ntBASIC3.99□□□□□ -1.77
MSX1P28360 SNORD116-13-201ENST00000384408 92 ntBASIC3.99□□□□□ -1.77
MSX1P28360 Y_RNA.495-201ENST00000384435 112 ntBASIC3.99□□□□□ -1.77
MSX1P28360 AC006028.1-201ENST00000438379 402 ntBASIC3.99□□□□□ -1.77
MSX1P28360 PHBP16-201ENST00000446318 950 ntBASIC3.99□□□□□ -1.77
MSX1P28360 RNA5SP310-201ENST00000459084 116 ntBASIC3.99□□□□□ -1.77
MSX1P28360 RNU6-437P-201ENST00000459408 95 ntBASIC3.99□□□□□ -1.77
MSX1P28360 AC091167.1-201ENST00000492017 396 ntBASIC3.99□□□□□ -1.77
MSX1P28360 RPL23AP54-201ENST00000495129 419 ntBASIC3.99□□□□□ -1.77
MSX1P28360 RNU6-844P-201ENST00000517175 102 ntBASIC3.99□□□□□ -1.77
MSX1P28360 AC026241.1-201ENST00000517873 2142 ntBASIC3.99□□□□□ -1.77
MSX1P28360 RPL30P11-203ENST00000598995 310 ntBASIC3.99□□□□□ -1.77
MSX1P28360 FAM27D1-201ENST00000612308 341 ntBASIC3.99□□□□□ -1.77
MSX1P28360 uc_338.32-201ENST00000615087 172 ntBASIC3.99□□□□□ -1.77
MSX1P28360 AL138721.1-201ENST00000616756 179 ntBASIC3.99□□□□□ -1.77
MSX1P28360 AL121890.5-201ENST00000620848 304 ntBASIC3.99□□□□□ -1.77
MSX1P28360 UGP2-230ENST00000626380 276 ntTSL 5 BASIC3.99□□□□□ -1.77
MSX1P28360 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC3.99□□□□□ -1.77
MSX1P28360 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
MSX1P28360 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.99□□□□□ -1.77
MSX1P28360 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC3.99□□□□□ -1.77
MSX1P28360 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC3.99□□□□□ -1.77
MSX1P28360 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
MSX1P28360 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC3.98□□□□□ -1.77
MSX1P28360 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
MSX1P28360 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.98□□□□□ -1.77
MSX1P28360 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
MSX1P28360 AL672167.1-203ENST00000641299 2975 ntBASIC3.98□□□□□ -1.77
MSX1P28360 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
MSX1P28360 RNU6-484P-201ENST00000384016 107 ntBASIC3.98□□□□□ -1.77
MSX1P28360 AL355796.1-201ENST00000406706 323 ntBASIC3.98□□□□□ -1.77
MSX1P28360 Y_RNA.617-201ENST00000410920 90 ntBASIC3.98□□□□□ -1.77
MSX1P28360 AC245291.1-201ENST00000419501 328 ntBASIC3.98□□□□□ -1.77
MSX1P28360 AL121890.1-201ENST00000435457 205 ntBASIC3.98□□□□□ -1.77
MSX1P28360 snoU13.28-201ENST00000459235 104 ntBASIC3.98□□□□□ -1.77
MSX1P28360 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC3.98□□□□□ -1.77
MSX1P28360 AP003730.1-201ENST00000524605 285 ntBASIC3.98□□□□□ -1.77
MSX1P28360 AC131055.1-201ENST00000584626 316 ntBASIC3.98□□□□□ -1.77
MSX1P28360 AC005972.2-201ENST00000604690 348 ntBASIC3.98□□□□□ -1.77
MSX1P28360 AL160290.3-201ENST00000604869 165 ntBASIC3.98□□□□□ -1.77
MSX1P28360 AC004832.5-201ENST00000608677 401 ntBASIC3.98□□□□□ -1.77
MSX1P28360 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.98□□□□□ -1.77
MSX1P28360 AC034229.5-201ENST00000624258 185 ntBASIC3.98□□□□□ -1.77
MSX1P28360 MIR3653-201ENST00000625572 110 ntBASIC3.98□□□□□ -1.77
MSX1P28360 AC140479.6-201ENST00000633535 357 ntBASIC3.98□□□□□ -1.77
MSX1P28360 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC3.98□□□□□ -1.77
MSX1P28360 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.77
MSX1P28360 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
MSX1P28360 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
MSX1P28360 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
MSX1P28360 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
MSX1P28360 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.98□□□□□ -1.77
MSX1P28360 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
MSX1P28360 PREPL-207ENST00000409957 4703 ntTSL 5 BASIC3.97□□□□□ -1.77
MSX1P28360 MYNN-202ENST00000356716 2833 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
MSX1P28360 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
MSX1P28360 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC3.97□□□□□ -1.77
MSX1P28360 MIR331-201ENST00000362302 94 ntBASIC3.97□□□□□ -1.77
MSX1P28360 RNU6-647P-201ENST00000364243 107 ntBASIC3.97□□□□□ -1.77
MSX1P28360 RNU4-41P-201ENST00000364426 143 ntBASIC3.97□□□□□ -1.77
MSX1P28360 RNU6-1164P-201ENST00000364428 107 ntBASIC3.97□□□□□ -1.77
MSX1P28360 Y_RNA.369-201ENST00000365568 117 ntBASIC3.97□□□□□ -1.77
MSX1P28360 SNORD18B-201ENST00000365659 72 ntBASIC3.97□□□□□ -1.77
MSX1P28360 RNU6-32P-201ENST00000383948 107 ntBASIC3.97□□□□□ -1.77
MSX1P28360 RNU6-13P-201ENST00000384248 107 ntBASIC3.97□□□□□ -1.77
MSX1P28360 RNU6-12P-201ENST00000384604 107 ntBASIC3.97□□□□□ -1.77
MSX1P28360 RNU6-136P-201ENST00000384663 107 ntBASIC3.97□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 184.3 ms