Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RN7SL691P-201ENST00000494487 301 ntBASIC3.83□□□□□ -1.8
COL8A1P27658 SNORA70.16-201ENST00000516390 95 ntBASIC3.83□□□□□ -1.8
COL8A1P27658 RNA5SP490-201ENST00000517141 136 ntBASIC3.83□□□□□ -1.8
COL8A1P27658 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL8A1P27658 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.83□□□□□ -1.8
COL8A1P27658 AC105245.1-201ENST00000581934 244 ntBASIC3.83□□□□□ -1.8
COL8A1P27658 AL365205.2-201ENST00000594586 68 ntBASIC3.83□□□□□ -1.8
COL8A1P27658 FAM71BP1-201ENST00000604431 523 ntBASIC3.83□□□□□ -1.8
COL8A1P27658 AL138721.1-201ENST00000616756 179 ntBASIC3.83□□□□□ -1.8
COL8A1P27658 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL8A1P27658 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
COL8A1P27658 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
COL8A1P27658 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.83□□□□□ -1.8
COL8A1P27658 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL8A1P27658 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
COL8A1P27658 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
COL8A1P27658 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
COL8A1P27658 LDHAL6CP-202ENST00000550738 3224 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
COL8A1P27658 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL8A1P27658 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC3.82□□□□□ -1.8
COL8A1P27658 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL8A1P27658 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
COL8A1P27658 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.82□□□□□ -1.8
COL8A1P27658 Y_RNA.17-201ENST00000362433 111 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 RNU6-629P-201ENST00000384061 103 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 U8.12-201ENST00000384701 133 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 MIR218-2-201ENST00000385006 110 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 SDHCP2-201ENST00000398565 501 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 NDUFB4P4-201ENST00000404822 243 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 Z92545.1-201ENST00000411782 234 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 CYCSP48-201ENST00000417124 323 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 EIF4HP2-201ENST00000424380 563 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 AC002075.2-201ENST00000425207 252 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 AC027124.2-201ENST00000428249 105 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 AC139453.2-201ENST00000487255 133 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 SNORD77.4-201ENST00000516158 81 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 RNA5SP236-201ENST00000516169 116 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 RNU6-904P-201ENST00000516206 101 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 RNA5SP519-201ENST00000516480 119 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 RNU6-1337P-201ENST00000516525 95 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 IFITM8P-201ENST00000522529 394 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.82□□□□□ -1.8
COL8A1P27658 MIR5006-201ENST00000583027 110 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 AC005972.2-201ENST00000604690 348 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 AC093732.2-201ENST00000607950 274 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 BMS1P21-201ENST00000634565 365 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL8A1P27658 ERGIC2-212ENST00000611644 4961 ntTSL 5 BASIC3.82□□□□□ -1.8
COL8A1P27658 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL8A1P27658 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL8A1P27658 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
COL8A1P27658 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC3.82□□□□□ -1.8
COL8A1P27658 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL8A1P27658 SLC2A2-201ENST00000314251 3210 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
COL8A1P27658 AL136360.1-201ENST00000503377 1900 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 ASNSP1-201ENST00000518311 1939 ntBASIC3.82□□□□□ -1.8
COL8A1P27658 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC3.81□□□□□ -1.8
COL8A1P27658 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
COL8A1P27658 Y_RNA.124-201ENST00000363339 93 ntBASIC3.81□□□□□ -1.8
COL8A1P27658 RNY4P6-201ENST00000363667 96 ntBASIC3.81□□□□□ -1.8
COL8A1P27658 U3.15-201ENST00000365398 212 ntBASIC3.81□□□□□ -1.8
COL8A1P27658 Y_RNA.362-201ENST00000365518 110 ntBASIC3.81□□□□□ -1.8
COL8A1P27658 SNORA67.2-201ENST00000384300 149 ntBASIC3.81□□□□□ -1.8
COL8A1P27658 SNORD116-13-201ENST00000384408 92 ntBASIC3.81□□□□□ -1.8
COL8A1P27658 MIR181B1-201ENST00000385240 110 ntBASIC3.81□□□□□ -1.8
COL8A1P27658 RNU6-279P-201ENST00000391297 101 ntBASIC3.81□□□□□ -1.8
COL8A1P27658 MIR873-201ENST00000401120 77 ntBASIC3.81□□□□□ -1.8
COL8A1P27658 RPL39P39-201ENST00000455840 151 ntBASIC3.81□□□□□ -1.8
COL8A1P27658 AC022137.1-201ENST00000483735 151 ntBASIC3.81□□□□□ -1.8
COL8A1P27658 AC078817.1-201ENST00000492623 435 ntBASIC3.81□□□□□ -1.8
COL8A1P27658 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC3.81□□□□□ -1.8
COL8A1P27658 IGKV3-31-201ENST00000523109 329 ntBASIC3.81□□□□□ -1.8
COL8A1P27658 AP004371.1-201ENST00000525240 214 ntBASIC3.81□□□□□ -1.8
COL8A1P27658 AC068339.1-201ENST00000526965 141 ntBASIC3.81□□□□□ -1.8
COL8A1P27658 AC090616.3-202ENST00000583346 205 ntTSL 2 BASIC3.81□□□□□ -1.8
COL8A1P27658 PCGEM1.1-201ENST00000613431 131 ntBASIC3.81□□□□□ -1.8
COL8A1P27658 AL137067.1-201ENST00000615933 120 ntBASIC3.81□□□□□ -1.8
COL8A1P27658 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
COL8A1P27658 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.81□□□□□ -1.8
COL8A1P27658 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC3.81□□□□□ -1.8
COL8A1P27658 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL8A1P27658 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL8A1P27658 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL8A1P27658 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
COL8A1P27658 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
COL8A1P27658 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC3.81□□□□□ -1.8
COL8A1P27658 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL8A1P27658 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
COL8A1P27658 AC125257.1-201ENST00000560400 2930 ntBASIC3.81□□□□□ -1.8
COL8A1P27658 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
COL8A1P27658 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
COL8A1P27658 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL8A1P27658 MFSD8-242ENST00000641690 4199 ntBASIC3.8□□□□□ -1.8
COL8A1P27658 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
COL8A1P27658 RNU1-108P-201ENST00000362556 161 ntBASIC3.8□□□□□ -1.8
COL8A1P27658 RNU6-217P-201ENST00000384164 104 ntBASIC3.8□□□□□ -1.8
COL8A1P27658 RNU6-788P-201ENST00000390967 104 ntBASIC3.8□□□□□ -1.8
COL8A1P27658 RNA5SP201-201ENST00000410316 124 ntBASIC3.8□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 109.1 ms