Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 AC098862.1-201ENST00000504991 413 ntBASIC1.06□□□□□ -2.24
CPSF4O95639 CCDC34P1-201ENST00000507441 517 ntBASIC1.06□□□□□ -2.24
CPSF4O95639 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.06□□□□□ -2.24
CPSF4O95639 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
CPSF4O95639 MIR3923-201ENST00000579521 83 ntBASIC1.06□□□□□ -2.24
CPSF4O95639 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.06□□□□□ -2.24
CPSF4O95639 MIR3941-201ENST00000582572 103 ntBASIC1.06□□□□□ -2.24
CPSF4O95639 AC119751.7-201ENST00000600494 245 ntBASIC1.06□□□□□ -2.24
CPSF4O95639 AP001836.1-201ENST00000604675 523 ntBASIC1.06□□□□□ -2.24
CPSF4O95639 AL356157.2-201ENST00000605122 111 ntBASIC1.06□□□□□ -2.24
CPSF4O95639 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.06□□□□□ -2.24
CPSF4O95639 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC1.06□□□□□ -2.24
CPSF4O95639 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
CPSF4O95639 LINC00305-201ENST00000323355 873 ntTSL 1 (best) BASIC1.05□□□□□ -2.24
CPSF4O95639 CBX3P1-201ENST00000325243 554 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 AC092268.1-201ENST00000342691 405 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 RNU6-1103P-201ENST00000384150 107 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 SNORA36A-201ENST00000384221 132 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 Y_RNA.504-201ENST00000384481 104 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.05□□□□□ -2.24
CPSF4O95639 RNA5SP100-201ENST00000410903 110 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 RNA5SP59-201ENST00000410922 110 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 AL353193.1-201ENST00000421444 268 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC1.05□□□□□ -2.24
CPSF4O95639 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.05□□□□□ -2.24
CPSF4O95639 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.05□□□□□ -2.24
CPSF4O95639 MTCO1P19-201ENST00000443487 500 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.05□□□□□ -2.24
CPSF4O95639 AL163973.1-201ENST00000484753 577 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 AC016632.1-201ENST00000503994 196 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 ATP5EP1-201ENST00000510257 156 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 AC005741.1-201ENST00000511094 432 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC1.05□□□□□ -2.24
CPSF4O95639 AC010493.1-201ENST00000513479 292 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 SNORA44.1-201ENST00000517031 108 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 MDM2-233ENST00000545204 398 ntTSL 5 BASIC1.05□□□□□ -2.24
CPSF4O95639 AC090115.3-201ENST00000553218 849 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC1.05□□□□□ -2.24
CPSF4O95639 AL158211.1-201ENST00000566763 763 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.05□□□□□ -2.24
CPSF4O95639 AC073648.5-201ENST00000603502 305 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 HULC.1-201ENST00000612720 240 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 PCGEM1.1-201ENST00000613431 131 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 uc_338.34-201ENST00000617467 174 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 AL354950.2-201ENST00000617939 290 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 AC022513.1-201ENST00000624512 117 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 LINC02555-201ENST00000563933 1951 ntBASIC1.05□□□□□ -2.24
CPSF4O95639 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
CPSF4O95639 ELL2P3-201ENST00000457883 1602 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 MIR340-201ENST00000362125 95 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 U3.9-201ENST00000363823 204 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 RNU6-378P-201ENST00000384324 107 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 Y_RNA.553-201ENST00000384670 102 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 SNORD73A-201ENST00000386062 65 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.04□□□□□ -2.24
CPSF4O95639 RNA5SP219-201ENST00000390940 113 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 MTCO3P41-201ENST00000414801 328 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 AC123900.1-201ENST00000420390 96 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 AC002486.1-201ENST00000435098 391 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC1.04□□□□□ -2.24
CPSF4O95639 SNRPEP8-201ENST00000442866 260 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC1.04□□□□□ -2.24
CPSF4O95639 AC112492.4-201ENST00000456549 352 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 snoU13.23-201ENST00000458863 104 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 AC130509.1-201ENST00000464158 433 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 RPS3AP17-201ENST00000472594 777 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 AC008628.2-201ENST00000502605 298 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 FAM206BP-201ENST00000510179 541 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.04□□□□□ -2.24
CPSF4O95639 RPL39P5-202ENST00000512505 151 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 RNU4ATAC8P-201ENST00000516196 109 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 MTND4P7-201ENST00000523876 130 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.04□□□□□ -2.24
CPSF4O95639 MIR4424-201ENST00000585257 86 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 AC004223.2-201ENST00000590309 544 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 Z98751.3-201ENST00000604447 521 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 AC010900.2-201ENST00000604508 210 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.04□□□□□ -2.24
CPSF4O95639 AC007684.1-201ENST00000609671 477 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 SNORA43.4-201ENST00000629559 138 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 MIR3974-201ENST00000637126 96 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.04□□□□□ -2.24
CPSF4O95639 AL161722.3-201ENST00000605789 2983 ntBASIC1.04□□□□□ -2.24
CPSF4O95639 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.03□□□□□ -2.24
CPSF4O95639 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.03□□□□□ -2.24
CPSF4O95639 MIR424-201ENST00000362227 98 ntBASIC1.03□□□□□ -2.24
CPSF4O95639 RNA5SP99-201ENST00000364020 114 ntBASIC1.03□□□□□ -2.24
CPSF4O95639 Y_RNA.255-201ENST00000364581 97 ntBASIC1.03□□□□□ -2.24
CPSF4O95639 Y_RNA.359-201ENST00000365498 102 ntBASIC1.03□□□□□ -2.24
CPSF4O95639 MIR513A1-201ENST00000385138 129 ntBASIC1.03□□□□□ -2.24
CPSF4O95639 SNORA12.2-201ENST00000391040 156 ntBASIC1.03□□□□□ -2.24
CPSF4O95639 AL606923.1-201ENST00000406616 190 ntBASIC1.03□□□□□ -2.24
CPSF4O95639 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.03□□□□□ -2.24
CPSF4O95639 AC090960.1-201ENST00000421072 306 ntBASIC1.03□□□□□ -2.24
CPSF4O95639 SDAD1P3-201ENST00000427380 333 ntBASIC1.03□□□□□ -2.24
CPSF4O95639 AL606489.2-201ENST00000433886 234 ntBASIC1.03□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 122.7 ms