Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 MIR921-201ENST00000401133 56 ntBASIC4.55□□□□□ -1.68
PCDHB3Q9Y5E6 AL353705.1-201ENST00000433468 480 ntBASIC4.55□□□□□ -1.68
PCDHB3Q9Y5E6 HMGN2P21-201ENST00000447764 270 ntBASIC4.55□□□□□ -1.68
PCDHB3Q9Y5E6 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.55□□□□□ -1.68
PCDHB3Q9Y5E6 AC023449.1-201ENST00000454464 154 ntBASIC4.55□□□□□ -1.68
PCDHB3Q9Y5E6 RNU6-158P-201ENST00000517104 100 ntBASIC4.55□□□□□ -1.68
PCDHB3Q9Y5E6 MIR4277-201ENST00000578298 84 ntBASIC4.55□□□□□ -1.68
PCDHB3Q9Y5E6 RN7SL176P-201ENST00000580352 264 ntBASIC4.55□□□□□ -1.68
PCDHB3Q9Y5E6 AL929325.1-201ENST00000603096 117 ntBASIC4.55□□□□□ -1.68
PCDHB3Q9Y5E6 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.55□□□□□ -1.68
PCDHB3Q9Y5E6 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
PCDHB3Q9Y5E6 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
PCDHB3Q9Y5E6 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
PCDHB3Q9Y5E6 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
PCDHB3Q9Y5E6 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.55□□□□□ -1.68
PCDHB3Q9Y5E6 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.55□□□□□ -1.68
PCDHB3Q9Y5E6 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 AL589745.1-201ENST00000421190 3336 ntTSL 5 BASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 RNU1-94P-201ENST00000362627 173 ntBASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 SNORA51.4-201ENST00000364993 124 ntBASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 SNORA70F-201ENST00000384142 135 ntBASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 RNA5SP239-201ENST00000410218 129 ntBASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 MTATP8P2-201ENST00000435212 202 ntBASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 ATP6V0E1P2-201ENST00000441771 245 ntBASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 RPL7AP28-201ENST00000464513 571 ntBASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 SNORD115-40-201ENST00000606510 82 ntBASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 RNU6-91P-201ENST00000607774 107 ntBASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 MALAT1.1-201ENST00000618249 95 ntBASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 Y_RNA.818-201ENST00000618813 71 ntBASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC4.54□□□□□ -1.68
PCDHB3Q9Y5E6 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 AC027290.2-201ENST00000623210 18662 ntBASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 RNU6-748P-201ENST00000384648 107 ntBASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 SNORA12-201ENST00000391162 147 ntBASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 RN7SKP177-201ENST00000410567 355 ntBASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 RNA5SP146-201ENST00000410743 123 ntBASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 AL645608.4-201ENST00000423619 154 ntBASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 SNORD11-201ENST00000459124 84 ntBASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 RNA5SP497-201ENST00000516081 97 ntBASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 Vault.1-201ENST00000516474 102 ntBASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 RNU6-113P-201ENST00000516653 101 ntBASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 RPL23AP97-201ENST00000568955 471 ntBASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 AC243829.5-201ENST00000578447 247 ntTSL 5 BASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 5S_rRNA.13-201ENST00000622298 123 ntBASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 AC000403.1-201ENST00000613696 3585 ntBASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 STON1-GTF2A1L-203ENST00000402114 3790 ntTSL 2 BASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.53□□□□□ -1.68
PCDHB3Q9Y5E6 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 AC087190.4-201ENST00000574616 8334 ntBASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 Y_RNA.66-201ENST00000362862 102 ntBASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 Y_RNA.111-201ENST00000363248 100 ntBASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 HDGFP1-201ENST00000405943 252 ntBASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 RN7SKP267-201ENST00000410381 285 ntBASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 RNA5SP511-201ENST00000410487 115 ntBASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 SNORA19.1-201ENST00000410656 129 ntBASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 AC007064.1-201ENST00000412238 351 ntBASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 Z74021.1-201ENST00000423610 407 ntBASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 SNORD65B-201ENST00000459126 73 ntBASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 AC010598.1-201ENST00000510378 103 ntBASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 RNA5SP20-201ENST00000515976 84 ntBASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 RNU6-65P-201ENST00000516332 98 ntBASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 AC015468.4-201ENST00000523496 568 ntTSL 4 BASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 AC011602.1-201ENST00000546484 331 ntBASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 AC015720.1-201ENST00000565251 277 ntBASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 MIR2681-201ENST00000581814 105 ntBASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 MIR4715-201ENST00000584117 79 ntBASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 AC091152.3-201ENST00000604227 325 ntBASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 AL137067.1-201ENST00000615933 120 ntBASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 Pinc.1-201ENST00000616452 154 ntBASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 MIR2052-201ENST00000636055 55 ntBASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
PCDHB3Q9Y5E6 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms