Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 AC025754.2-201ENST00000606491 432 ntBASIC2.41□□□□□ -2.02
SKA1Q96BD8 FAM157A-202ENST00000615155 405 ntBASIC2.41□□□□□ -2.02
SKA1Q96BD8 AL162373.1-201ENST00000620433 407 ntBASIC2.41□□□□□ -2.02
SKA1Q96BD8 MIR7843-201ENST00000622274 79 ntBASIC2.41□□□□□ -2.02
SKA1Q96BD8 AC130454.1-201ENST00000622948 401 ntBASIC2.41□□□□□ -2.02
SKA1Q96BD8 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.41□□□□□ -2.02
SKA1Q96BD8 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.41□□□□□ -2.02
SKA1Q96BD8 ZNF720P1-201ENST00000562403 1939 ntBASIC2.4□□□□□ -2.02
SKA1Q96BD8 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.4□□□□□ -2.02
SKA1Q96BD8 AC016717.2-201ENST00000609089 5141 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
SKA1Q96BD8 RNU6-254P-201ENST00000363377 107 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 RNU6-1164P-201ENST00000364428 107 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 Y_RNA.530-201ENST00000384587 101 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 RNU6-160P-201ENST00000384591 107 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 SNORA41-201ENST00000384675 132 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 Y_RNA.573-201ENST00000384763 105 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.4□□□□□ -2.03
SKA1Q96BD8 U3.40-201ENST00000408706 208 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 Y_RNA.615-201ENST00000410769 117 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 RNU6-325P-201ENST00000411132 105 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 AL030996.1-201ENST00000411430 235 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 MTCO1P21-201ENST00000416634 589 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 AL158823.1-201ENST00000418441 478 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 AL589823.1-201ENST00000429577 183 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 AL353689.1-201ENST00000438895 199 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 HMGN2P18-201ENST00000450680 270 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 PMCHL2-203ENST00000457791 237 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 snoU13.15-201ENST00000459407 104 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 HMGN2P26-201ENST00000463169 339 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 RPS29P21-201ENST00000496272 170 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC2.4□□□□□ -2.03
SKA1Q96BD8 AP005660.1-201ENST00000522972 293 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 MTND1P35-201ENST00000526739 508 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.4□□□□□ -2.03
SKA1Q96BD8 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC2.4□□□□□ -2.03
SKA1Q96BD8 MIR1273D-201ENST00000577266 86 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 AC243960.4-201ENST00000600532 288 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 U4.5-201ENST00000617137 123 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 U1.36-201ENST00000620684 176 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 MIR1291-201ENST00000627649 87 ntBASIC2.4□□□□□ -2.03
SKA1Q96BD8 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.4□□□□□ -2.03
SKA1Q96BD8 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.4□□□□□ -2.03
SKA1Q96BD8 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.4□□□□□ -2.03
SKA1Q96BD8 FGF7-206ENST00000614567 3936 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
SKA1Q96BD8 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC2.4□□□□□ -2.03
SKA1Q96BD8 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2.39□□□□□ -2.03
SKA1Q96BD8 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
SKA1Q96BD8 Y_RNA.3-201ENST00000362331 103 ntBASIC2.39□□□□□ -2.03
SKA1Q96BD8 RNY4P14-201ENST00000363656 96 ntBASIC2.39□□□□□ -2.03
SKA1Q96BD8 RNU6-1090P-201ENST00000364065 94 ntBASIC2.39□□□□□ -2.03
SKA1Q96BD8 Y_RNA.256-201ENST00000364594 104 ntBASIC2.39□□□□□ -2.03
SKA1Q96BD8 MIR1283-2-201ENST00000408621 87 ntBASIC2.39□□□□□ -2.03
SKA1Q96BD8 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.39□□□□□ -2.03
SKA1Q96BD8 HMGN2P3-201ENST00000433603 273 ntBASIC2.39□□□□□ -2.03
SKA1Q96BD8 HMGN2P5-201ENST00000436882 273 ntBASIC2.39□□□□□ -2.03
SKA1Q96BD8 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
SKA1Q96BD8 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.39□□□□□ -2.03
SKA1Q96BD8 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.39□□□□□ -2.03
SKA1Q96BD8 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.39□□□□□ -2.03
SKA1Q96BD8 RNU5F-4P-201ENST00000516581 114 ntBASIC2.39□□□□□ -2.03
SKA1Q96BD8 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC2.39□□□□□ -2.03
SKA1Q96BD8 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC2.39□□□□□ -2.03
SKA1Q96BD8 AL158827.2-201ENST00000602494 330 ntBASIC2.39□□□□□ -2.03
SKA1Q96BD8 MIR6873-201ENST00000622788 63 ntBASIC2.39□□□□□ -2.03
SKA1Q96BD8 AL691447.3-201ENST00000635020 330 ntBASIC2.39□□□□□ -2.03
SKA1Q96BD8 AC009487.4-201ENST00000624969 3585 ntBASIC2.39□□□□□ -2.03
SKA1Q96BD8 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
SKA1Q96BD8 Y_RNA.100-201ENST00000363141 102 ntBASIC2.38□□□□□ -2.03
SKA1Q96BD8 Y_RNA.123-201ENST00000363338 102 ntBASIC2.38□□□□□ -2.03
SKA1Q96BD8 RNU6-438P-201ENST00000365561 103 ntBASIC2.38□□□□□ -2.03
SKA1Q96BD8 MIR521-1-201ENST00000384902 87 ntBASIC2.38□□□□□ -2.03
SKA1Q96BD8 AL645568.3-201ENST00000433683 316 ntBASIC2.38□□□□□ -2.03
SKA1Q96BD8 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.38□□□□□ -2.03
SKA1Q96BD8 RPL23AP3-201ENST00000453844 468 ntBASIC2.38□□□□□ -2.03
SKA1Q96BD8 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.38□□□□□ -2.03
SKA1Q96BD8 AC096745.1-201ENST00000509945 370 ntBASIC2.38□□□□□ -2.03
SKA1Q96BD8 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.38□□□□□ -2.03
SKA1Q96BD8 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.38□□□□□ -2.03
SKA1Q96BD8 AC090517.1-201ENST00000569307 266 ntBASIC2.38□□□□□ -2.03
SKA1Q96BD8 AC009994.1-201ENST00000606889 253 ntBASIC2.38□□□□□ -2.03
SKA1Q96BD8 AC067747.1-201ENST00000608026 250 ntBASIC2.38□□□□□ -2.03
SKA1Q96BD8 MIR8076-201ENST00000611401 83 ntBASIC2.38□□□□□ -2.03
SKA1Q96BD8 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.38□□□□□ -2.03
SKA1Q96BD8 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.38□□□□□ -2.03
SKA1Q96BD8 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
SKA1Q96BD8 RNU6-23P-201ENST00000363283 107 ntBASIC2.37□□□□□ -2.03
SKA1Q96BD8 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.37□□□□□ -2.03
SKA1Q96BD8 RNU6-1093P-201ENST00000391194 107 ntBASIC2.37□□□□□ -2.03
SKA1Q96BD8 RN7SKP223-201ENST00000410582 62 ntBASIC2.37□□□□□ -2.03
SKA1Q96BD8 ZNF885P-201ENST00000420174 1098 ntBASIC2.37□□□□□ -2.03
SKA1Q96BD8 MTND1P34-201ENST00000438556 671 ntBASIC2.37□□□□□ -2.03
SKA1Q96BD8 RPL23AP6-201ENST00000446637 472 ntBASIC2.37□□□□□ -2.03
SKA1Q96BD8 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC2.37□□□□□ -2.03
SKA1Q96BD8 AC007547.1-201ENST00000462177 490 ntBASIC2.37□□□□□ -2.03
SKA1Q96BD8 RNA5SP281-201ENST00000516504 135 ntBASIC2.37□□□□□ -2.03
SKA1Q96BD8 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC2.37□□□□□ -2.03
SKA1Q96BD8 TPRKBP2-201ENST00000565969 475 ntBASIC2.37□□□□□ -2.03
SKA1Q96BD8 CPDP1-201ENST00000579660 283 ntBASIC2.37□□□□□ -2.03
SKA1Q96BD8 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.37□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 121.6 ms