Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 RN7SKP49-201ENST00000516675 260 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 RNU6-1198P-201ENST00000516904 67 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 RNU6-1231P-201ENST00000517185 103 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 SCARNA20.6-201ENST00000517251 106 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 DEFB108E-201ENST00000524692 240 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.75□□□□□ -1.97
HOXA4Q00056 AC073657.2-201ENST00000605661 303 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 RNU6-91P-201ENST00000607774 107 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 RMST_8.1-201ENST00000610287 165 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 uc_338.1-201ENST00000612113 180 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.75□□□□□ -1.97
HOXA4Q00056 MFSD8-233ENST00000641482 4860 ntBASIC2.75□□□□□ -1.97
HOXA4Q00056 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.74□□□□□ -1.97
HOXA4Q00056 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC2.74□□□□□ -1.97
HOXA4Q00056 SNORD114-19-201ENST00000363072 75 ntBASIC2.74□□□□□ -1.97
HOXA4Q00056 SNORA20.1-201ENST00000364790 130 ntBASIC2.74□□□□□ -1.97
HOXA4Q00056 RNU6-102P-201ENST00000384485 104 ntBASIC2.74□□□□□ -1.97
HOXA4Q00056 Y_RNA.541-201ENST00000384640 113 ntBASIC2.74□□□□□ -1.97
HOXA4Q00056 U3.26-201ENST00000391236 204 ntBASIC2.74□□□□□ -1.97
HOXA4Q00056 MRPL35P1-201ENST00000404272 572 ntBASIC2.74□□□□□ -1.97
HOXA4Q00056 RNA5SP120-201ENST00000410900 112 ntBASIC2.74□□□□□ -1.97
HOXA4Q00056 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.74□□□□□ -1.97
HOXA4Q00056 CYCSP48-201ENST00000417124 323 ntBASIC2.74□□□□□ -1.97
HOXA4Q00056 AC009414.1-201ENST00000427200 443 ntBASIC2.74□□□□□ -1.97
HOXA4Q00056 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXA4Q00056 AC112771.1-201ENST00000463581 102 ntBASIC2.74□□□□□ -1.97
HOXA4Q00056 RN7SL504P-201ENST00000494496 287 ntBASIC2.74□□□□□ -1.97
HOXA4Q00056 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC2.74□□□□□ -1.97
HOXA4Q00056 MIR4474-201ENST00000579189 78 ntBASIC2.74□□□□□ -1.97
HOXA4Q00056 AC007179.3-201ENST00000604976 235 ntBASIC2.74□□□□□ -1.97
HOXA4Q00056 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
HOXA4Q00056 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC2.73□□□□□ -1.97
HOXA4Q00056 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC2.73□□□□□ -1.97
HOXA4Q00056 ZNF204P-201ENST00000416749 2397 ntBASIC2.73□□□□□ -1.97
HOXA4Q00056 AL391987.6-201ENST00000305671 199 ntBASIC2.73□□□□□ -1.97
HOXA4Q00056 RNU6-1010P-201ENST00000362757 107 ntBASIC2.73□□□□□ -1.97
HOXA4Q00056 RNU6-873P-201ENST00000363833 107 ntBASIC2.73□□□□□ -1.97
HOXA4Q00056 SNORA14A-201ENST00000364773 135 ntBASIC2.73□□□□□ -1.97
HOXA4Q00056 RNA5-8SP4-201ENST00000365096 150 ntBASIC2.73□□□□□ -1.97
HOXA4Q00056 SPRR2E-201ENST00000368750 678 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
HOXA4Q00056 RPS26P42-201ENST00000413485 326 ntBASIC2.73□□□□□ -1.97
HOXA4Q00056 AC139712.2-201ENST00000424302 339 ntBASIC2.73□□□□□ -1.97
HOXA4Q00056 AIMP1P2-201ENST00000425294 312 ntBASIC2.73□□□□□ -1.97
HOXA4Q00056 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC2.73□□□□□ -1.97
HOXA4Q00056 AC010401.1-201ENST00000463867 348 ntBASIC2.73□□□□□ -1.97
HOXA4Q00056 AC021205.2-201ENST00000480069 347 ntBASIC2.73□□□□□ -1.97
HOXA4Q00056 RPL26P26-201ENST00000480251 434 ntBASIC2.73□□□□□ -1.97
HOXA4Q00056 RPL7P47-201ENST00000497299 556 ntBASIC2.73□□□□□ -1.97
HOXA4Q00056 HMGB3P17-201ENST00000504195 649 ntBASIC2.73□□□□□ -1.97
HOXA4Q00056 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.73□□□□□ -1.97
HOXA4Q00056 CYP4A27P-201ENST00000567218 190 ntBASIC2.73□□□□□ -1.97
HOXA4Q00056 MIR2682-201ENST00000580305 110 ntBASIC2.73□□□□□ -1.97
HOXA4Q00056 MIR3136-201ENST00000583498 78 ntBASIC2.73□□□□□ -1.97
HOXA4Q00056 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC2.73□□□□□ -1.97
HOXA4Q00056 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC2.73□□□□□ -1.97
HOXA4Q00056 AL357075.2-201ENST00000614906 189 ntBASIC2.73□□□□□ -1.97
HOXA4Q00056 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.73□□□□□ -1.97
HOXA4Q00056 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.73□□□□□ -1.97
HOXA4Q00056 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC2.73□□□□□ -1.97
HOXA4Q00056 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.73□□□□□ -1.97
HOXA4Q00056 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
HOXA4Q00056 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
HOXA4Q00056 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.72□□□□□ -1.97
HOXA4Q00056 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC2.72□□□□□ -1.97
HOXA4Q00056 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC2.72□□□□□ -1.97
HOXA4Q00056 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
HOXA4Q00056 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC2.72□□□□□ -1.97
HOXA4Q00056 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC2.72□□□□□ -1.97
HOXA4Q00056 RNU6-626P-201ENST00000363354 107 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 RNU6-961P-201ENST00000363893 105 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 Y_RNA.333-201ENST00000365274 102 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 SNORD63-201ENST00000384262 68 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 RNU6-378P-201ENST00000384324 107 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 Y_RNA.552-201ENST00000384665 112 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 MIR34B-201ENST00000385076 84 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 MIR208B-201ENST00000401172 77 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 CBX3P9-201ENST00000402326 552 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 RN7SKP111-201ENST00000410349 271 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.72□□□□□ -1.97
HOXA4Q00056 AC005002.2-201ENST00000438228 269 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 Z98949.2-201ENST00000440996 144 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 AC007215.1-201ENST00000464893 276 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 RPL23AP67-201ENST00000465341 474 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC2.72□□□□□ -1.97
HOXA4Q00056 RPS27P26-201ENST00000494583 239 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 RNU6-496P-201ENST00000516145 99 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 RNU6-1338P-201ENST00000516328 91 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 SNORA25.14-201ENST00000516481 132 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 RNU6-567P-201ENST00000516746 107 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 RNA5SP54-201ENST00000516951 92 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 SCARNA24.2-201ENST00000516968 130 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 RNU6-111P-201ENST00000517179 105 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 RNU6-711P-201ENST00000517255 106 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 MIR3923-201ENST00000579521 83 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 AC012493.2-201ENST00000595083 291 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 AC096577.2-201ENST00000611455 153 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 AC010999.1-201ENST00000611856 324 ntBASIC2.72□□□□□ -1.97
HOXA4Q00056 CPD-202ENST00000543464 4007 ntTSL 2 BASIC2.71□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms