Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 MIR208B-201ENST00000401172 77 ntBASIC2.09□□□□□ -2.07
SIX3O95343 MTND1P23-201ENST00000416931 372 ntBASIC2.09□□□□□ -2.07
SIX3O95343 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.09□□□□□ -2.07
SIX3O95343 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC2.09□□□□□ -2.07
SIX3O95343 IPO7P1-201ENST00000442031 636 ntBASIC2.09□□□□□ -2.07
SIX3O95343 AL359672.1-201ENST00000442302 409 ntBASIC2.09□□□□□ -2.07
SIX3O95343 AC083904.1-201ENST00000487828 231 ntBASIC2.09□□□□□ -2.07
SIX3O95343 RPL38P4-201ENST00000502376 214 ntBASIC2.09□□□□□ -2.07
SIX3O95343 AC019235.1-201ENST00000503847 207 ntBASIC2.09□□□□□ -2.07
SIX3O95343 AC116337.1-201ENST00000509680 687 ntBASIC2.09□□□□□ -2.07
SIX3O95343 AC093259.1-201ENST00000509755 300 ntBASIC2.09□□□□□ -2.07
SIX3O95343 AC091874.1-201ENST00000511402 339 ntBASIC2.09□□□□□ -2.07
SIX3O95343 RNA5SP490-201ENST00000517141 136 ntBASIC2.09□□□□□ -2.07
SIX3O95343 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC2.09□□□□□ -2.07
SIX3O95343 AP005597.4-201ENST00000526762 229 ntBASIC2.09□□□□□ -2.07
SIX3O95343 MIR1273D-201ENST00000577266 86 ntBASIC2.09□□□□□ -2.07
SIX3O95343 AC010525.2-201ENST00000590920 195 ntBASIC2.09□□□□□ -2.07
SIX3O95343 AC078795.3-201ENST00000602913 472 ntBASIC2.09□□□□□ -2.07
SIX3O95343 AL022345.1-201ENST00000607292 135 ntBASIC2.09□□□□□ -2.07
SIX3O95343 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.09□□□□□ -2.07
SIX3O95343 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.09□□□□□ -2.07
SIX3O95343 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.07
SIX3O95343 MTND4P23-201ENST00000447723 1363 ntBASIC2.09□□□□□ -2.08
SIX3O95343 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC2.09□□□□□ -2.08
SIX3O95343 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.08□□□□□ -2.08
SIX3O95343 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
SIX3O95343 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.08□□□□□ -2.08
SIX3O95343 AL596028.1-201ENST00000326971 197 ntBASIC2.08□□□□□ -2.08
SIX3O95343 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.08□□□□□ -2.08
SIX3O95343 RNU6-438P-201ENST00000365561 103 ntBASIC2.08□□□□□ -2.08
SIX3O95343 MIR613-201ENST00000385248 95 ntBASIC2.08□□□□□ -2.08
SIX3O95343 MIR450B-201ENST00000401182 78 ntBASIC2.08□□□□□ -2.08
SIX3O95343 MIR1262-201ENST00000408276 93 ntBASIC2.08□□□□□ -2.08
SIX3O95343 RNU6-321P-201ENST00000410912 106 ntBASIC2.08□□□□□ -2.08
SIX3O95343 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC2.08□□□□□ -2.08
SIX3O95343 RPL23AP7-203ENST00000449021 469 ntBASIC2.08□□□□□ -2.08
SIX3O95343 RNA5SP57-201ENST00000459463 123 ntBASIC2.08□□□□□ -2.08
SIX3O95343 SCARNA16.3-201ENST00000516595 184 ntBASIC2.08□□□□□ -2.08
SIX3O95343 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC2.08□□□□□ -2.08
SIX3O95343 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.08□□□□□ -2.08
SIX3O95343 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.08□□□□□ -2.08
SIX3O95343 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.08□□□□□ -2.08
SIX3O95343 AC064836.2-201ENST00000609491 462 ntBASIC2.08□□□□□ -2.08
SIX3O95343 AC068944.2-201ENST00000610373 403 ntBASIC2.08□□□□□ -2.08
SIX3O95343 MIR6840-201ENST00000611937 71 ntBASIC2.08□□□□□ -2.08
SIX3O95343 AC068137.3-201ENST00000639191 341 ntBASIC2.08□□□□□ -2.08
SIX3O95343 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.08□□□□□ -2.08
SIX3O95343 RNU6-227P-201ENST00000362865 103 ntBASIC2.07□□□□□ -2.08
SIX3O95343 RNU6-1317P-201ENST00000364582 104 ntBASIC2.07□□□□□ -2.08
SIX3O95343 RNA5SP160-201ENST00000364866 120 ntBASIC2.07□□□□□ -2.08
SIX3O95343 Y_RNA.374-201ENST00000365606 101 ntBASIC2.07□□□□□ -2.08
SIX3O95343 RNU6-1329P-201ENST00000365664 107 ntBASIC2.07□□□□□ -2.08
SIX3O95343 SNORA64-201ENST00000384674 134 ntBASIC2.07□□□□□ -2.08
SIX3O95343 SNORA48.3-201ENST00000391081 134 ntBASIC2.07□□□□□ -2.08
SIX3O95343 RNU2-48P-201ENST00000410694 191 ntBASIC2.07□□□□□ -2.08
SIX3O95343 EIF1AXP1-201ENST00000419267 435 ntBASIC2.07□□□□□ -2.08
SIX3O95343 BX510359.4-201ENST00000423750 193 ntBASIC2.07□□□□□ -2.08
SIX3O95343 RPL23AP95-201ENST00000426806 265 ntBASIC2.07□□□□□ -2.08
SIX3O95343 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.07□□□□□ -2.08
SIX3O95343 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.07□□□□□ -2.08
SIX3O95343 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC2.07□□□□□ -2.08
SIX3O95343 RNU6-717P-201ENST00000459076 104 ntBASIC2.07□□□□□ -2.08
SIX3O95343 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.07□□□□□ -2.08
SIX3O95343 AC005741.1-201ENST00000511094 432 ntBASIC2.07□□□□□ -2.08
SIX3O95343 AC025465.4-201ENST00000513422 638 ntBASIC2.07□□□□□ -2.08
SIX3O95343 LIAS-206ENST00000513731 826 ntTSL 5 BASIC2.07□□□□□ -2.08
SIX3O95343 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC2.07□□□□□ -2.08
SIX3O95343 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.07□□□□□ -2.08
SIX3O95343 AL157687.1-201ENST00000554853 619 ntBASIC2.07□□□□□ -2.08
SIX3O95343 CYP4A27P-201ENST00000567218 190 ntBASIC2.07□□□□□ -2.08
SIX3O95343 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC2.07□□□□□ -2.08
SIX3O95343 CYP2C61P-201ENST00000604072 290 ntBASIC2.07□□□□□ -2.08
SIX3O95343 Z98751.3-201ENST00000604447 521 ntBASIC2.07□□□□□ -2.08
SIX3O95343 RNU6-89P-201ENST00000606519 100 ntBASIC2.07□□□□□ -2.08
SIX3O95343 AC092954.2-201ENST00000609103 430 ntBASIC2.07□□□□□ -2.08
SIX3O95343 SDR42E1P4-201ENST00000620894 481 ntBASIC2.07□□□□□ -2.08
SIX3O95343 MIR6132-201ENST00000622083 109 ntBASIC2.07□□□□□ -2.08
SIX3O95343 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC2.07□□□□□ -2.08
SIX3O95343 FER-210ENST00000628534 558 ntTSL 5 BASIC2.07□□□□□ -2.08
SIX3O95343 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.06□□□□□ -2.08
SIX3O95343 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.06□□□□□ -2.08
SIX3O95343 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
SIX3O95343 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
SIX3O95343 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.06□□□□□ -2.08
SIX3O95343 Y_RNA.318-201ENST00000365131 97 ntBASIC2.06□□□□□ -2.08
SIX3O95343 RNU6-234P-201ENST00000365229 104 ntBASIC2.06□□□□□ -2.08
SIX3O95343 MIR521-1-201ENST00000384902 87 ntBASIC2.06□□□□□ -2.08
SIX3O95343 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
SIX3O95343 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
SIX3O95343 AL512604.1-201ENST00000404812 257 ntBASIC2.06□□□□□ -2.08
SIX3O95343 RNA5SP338-201ENST00000410495 85 ntBASIC2.06□□□□□ -2.08
SIX3O95343 MTCO1P20-201ENST00000425366 358 ntBASIC2.06□□□□□ -2.08
SIX3O95343 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC2.06□□□□□ -2.08
SIX3O95343 AL021397.1-201ENST00000451806 248 ntBASIC2.06□□□□□ -2.08
SIX3O95343 AMD1P1-201ENST00000457220 922 ntBASIC2.06□□□□□ -2.08
SIX3O95343 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.06□□□□□ -2.08
SIX3O95343 RNU5F-4P-201ENST00000516581 114 ntBASIC2.06□□□□□ -2.08
SIX3O95343 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC2.06□□□□□ -2.08
SIX3O95343 AC026371.1-201ENST00000551867 419 ntBASIC2.06□□□□□ -2.08
SIX3O95343 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms