Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
LIMD1Q9UGP4 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
LIMD1Q9UGP4 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
LIMD1Q9UGP4 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
LIMD1Q9UGP4 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
LIMD1Q9UGP4 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC4.56□□□□□ -1.68
LIMD1Q9UGP4 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC4.56□□□□□ -1.68
LIMD1Q9UGP4 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
LIMD1Q9UGP4 RNU6-271P-201ENST00000363858 105 ntBASIC4.55□□□□□ -1.68
LIMD1Q9UGP4 RNA5SP130-201ENST00000364431 114 ntBASIC4.55□□□□□ -1.68
LIMD1Q9UGP4 Y_RNA.521-201ENST00000384560 114 ntBASIC4.55□□□□□ -1.68
LIMD1Q9UGP4 RNU4-43P-201ENST00000410628 137 ntBASIC4.55□□□□□ -1.68
LIMD1Q9UGP4 RNA5SP38-201ENST00000410750 119 ntBASIC4.55□□□□□ -1.68
LIMD1Q9UGP4 GOT2P5-201ENST00000433995 546 ntBASIC4.55□□□□□ -1.68
LIMD1Q9UGP4 KRTAP13-6P-201ENST00000508999 371 ntBASIC4.55□□□□□ -1.68
LIMD1Q9UGP4 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.55□□□□□ -1.68
LIMD1Q9UGP4 AC006111.3-201ENST00000622137 383 ntBASIC4.55□□□□□ -1.68
LIMD1Q9UGP4 RAP2C-AS1-202ENST00000441399 3473 ntTSL 2 BASIC4.55□□□□□ -1.68
LIMD1Q9UGP4 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
LIMD1Q9UGP4 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
LIMD1Q9UGP4 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
LIMD1Q9UGP4 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.55□□□□□ -1.68
LIMD1Q9UGP4 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 ENPP2-202ENST00000259486 3233 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 Y_RNA.393-201ENST00000383936 102 ntBASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 MIR300-201ENST00000401138 83 ntBASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 RBMY2UP-201ENST00000453474 324 ntBASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 RN7SL691P-201ENST00000494487 301 ntBASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 RN7SKP179-201ENST00000516126 217 ntBASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 RNU7-115P-201ENST00000516433 55 ntBASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 RNU5F-4P-201ENST00000516581 114 ntBASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 RNU6-1234P-201ENST00000516877 103 ntBASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 SNORA31.21-201ENST00000517180 77 ntBASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 AC022655.2-201ENST00000577280 318 ntBASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 AC008739.2-201ENST00000597006 317 ntBASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 MIR6891-201ENST00000618788 93 ntBASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 AC005086.4-201ENST00000623065 213 ntBASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
LIMD1Q9UGP4 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC4.53□□□□□ -1.68
LIMD1Q9UGP4 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.53□□□□□ -1.68
LIMD1Q9UGP4 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
LIMD1Q9UGP4 MIR518C-201ENST00000384822 101 ntBASIC4.53□□□□□ -1.68
LIMD1Q9UGP4 MT-TT-201ENST00000387460 66 ntBASIC4.53□□□□□ -1.68
LIMD1Q9UGP4 RPL21P65-201ENST00000406094 466 ntBASIC4.53□□□□□ -1.68
LIMD1Q9UGP4 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC4.53□□□□□ -1.68
LIMD1Q9UGP4 RPL23AP7-203ENST00000449021 469 ntBASIC4.53□□□□□ -1.68
LIMD1Q9UGP4 CENPBD1P1-201ENST00000464061 469 ntBASIC4.53□□□□□ -1.68
LIMD1Q9UGP4 RNA5SP497-201ENST00000516081 97 ntBASIC4.53□□□□□ -1.68
LIMD1Q9UGP4 Y_RNA.686-201ENST00000516548 134 ntBASIC4.53□□□□□ -1.68
LIMD1Q9UGP4 AP001328.1-201ENST00000528550 176 ntBASIC4.53□□□□□ -1.68
LIMD1Q9UGP4 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
LIMD1Q9UGP4 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC4.53□□□□□ -1.68
LIMD1Q9UGP4 MIR3944-201ENST00000581277 108 ntBASIC4.53□□□□□ -1.68
LIMD1Q9UGP4 AC068647.2-201ENST00000637380 353 ntBASIC4.53□□□□□ -1.68
LIMD1Q9UGP4 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
LIMD1Q9UGP4 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.53□□□□□ -1.68
LIMD1Q9UGP4 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.53□□□□□ -1.68
LIMD1Q9UGP4 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 KYNU-201ENST00000264170 15316 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 SNORD46.1-201ENST00000364139 104 ntBASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 SNORD32B-201ENST00000364460 84 ntBASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 RNU6-1325P-201ENST00000364905 105 ntBASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 U8.7-201ENST00000364940 136 ntBASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 SNORA51.4-201ENST00000364993 124 ntBASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 SNORA12-201ENST00000391162 147 ntBASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 SNORA79-201ENST00000408376 140 ntBASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 RNU6ATAC-201ENST00000408749 126 ntBASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 SNORA36B-201ENST00000410438 131 ntBASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 HMGN2P9-201ENST00000476875 229 ntBASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 RPL36AP21-201ENST00000490372 323 ntBASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 RNU7-116P-201ENST00000516940 62 ntBASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 RN7SL703P-201ENST00000578485 302 ntBASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 U7.2-201ENST00000607576 63 ntBASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 CR392039.5-201ENST00000623201 510 ntBASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC4.52□□□□□ -1.69
LIMD1Q9UGP4 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms