Protein–RNA interactions for Protein: Q9H2S5

RNF39, RING finger protein 39, humanhuman

Predictions only

Length 420 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF39Q9H2S5 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.84□□□□□ -1.47
RNF39Q9H2S5 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
RNF39Q9H2S5 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
RNF39Q9H2S5 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
RNF39Q9H2S5 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.83□□□□□ -1.48
RNF39Q9H2S5 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
RNF39Q9H2S5 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.83□□□□□ -1.48
RNF39Q9H2S5 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
RNF39Q9H2S5 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
RNF39Q9H2S5 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
RNF39Q9H2S5 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.83□□□□□ -1.48
RNF39Q9H2S5 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC5.83□□□□□ -1.48
RNF39Q9H2S5 HSBP1P2-201ENST00000299671 229 ntBASIC5.83□□□□□ -1.48
RNF39Q9H2S5 SNORD114-10-201ENST00000363409 72 ntBASIC5.83□□□□□ -1.48
RNF39Q9H2S5 RNA5SP507-201ENST00000363603 121 ntBASIC5.83□□□□□ -1.48
RNF39Q9H2S5 RNU6-1187P-201ENST00000364771 110 ntBASIC5.83□□□□□ -1.48
RNF39Q9H2S5 SNORA70.7-201ENST00000384159 133 ntBASIC5.83□□□□□ -1.48
RNF39Q9H2S5 MIR548U-201ENST00000390728 81 ntBASIC5.83□□□□□ -1.48
RNF39Q9H2S5 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.83□□□□□ -1.48
RNF39Q9H2S5 HSPE1P24-201ENST00000450782 238 ntBASIC5.83□□□□□ -1.48
RNF39Q9H2S5 RPS23P1-201ENST00000491662 432 ntBASIC5.83□□□□□ -1.48
RNF39Q9H2S5 SNORA4.4-201ENST00000515921 135 ntBASIC5.83□□□□□ -1.48
RNF39Q9H2S5 AP006245.2-201ENST00000522004 300 ntBASIC5.83□□□□□ -1.48
RNF39Q9H2S5 HMGN2P6-201ENST00000551091 273 ntBASIC5.83□□□□□ -1.48
RNF39Q9H2S5 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC5.83□□□□□ -1.48
RNF39Q9H2S5 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
RNF39Q9H2S5 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
RNF39Q9H2S5 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.83□□□□□ -1.48
RNF39Q9H2S5 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
RNF39Q9H2S5 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.83□□□□□ -1.48
RNF39Q9H2S5 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
RNF39Q9H2S5 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
RNF39Q9H2S5 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
RNF39Q9H2S5 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
RNF39Q9H2S5 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
RNF39Q9H2S5 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
RNF39Q9H2S5 RNU6-940P-201ENST00000363433 104 ntBASIC5.82□□□□□ -1.48
RNF39Q9H2S5 RNU6-424P-201ENST00000384367 105 ntBASIC5.82□□□□□ -1.48
RNF39Q9H2S5 SNORD116-26-201ENST00000516006 96 ntBASIC5.82□□□□□ -1.48
RNF39Q9H2S5 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.82□□□□□ -1.48
RNF39Q9H2S5 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
RNF39Q9H2S5 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.82□□□□□ -1.48
RNF39Q9H2S5 AC069114.2-201ENST00000604699 304 ntBASIC5.82□□□□□ -1.48
RNF39Q9H2S5 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.82□□□□□ -1.48
RNF39Q9H2S5 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC5.82□□□□□ -1.48
RNF39Q9H2S5 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC5.82□□□□□ -1.48
RNF39Q9H2S5 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.82□□□□□ -1.48
RNF39Q9H2S5 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
RNF39Q9H2S5 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.82□□□□□ -1.48
RNF39Q9H2S5 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.82□□□□□ -1.48
RNF39Q9H2S5 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.82□□□□□ -1.48
RNF39Q9H2S5 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.82□□□□□ -1.48
RNF39Q9H2S5 AC006971.1-201ENST00000407916 4486 ntBASIC5.82□□□□□ -1.48
RNF39Q9H2S5 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC5.81□□□□□ -1.48
RNF39Q9H2S5 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.81□□□□□ -1.48
RNF39Q9H2S5 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.81□□□□□ -1.48
RNF39Q9H2S5 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
RNF39Q9H2S5 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC5.81□□□□□ -1.48
RNF39Q9H2S5 SNORA72.6-201ENST00000384520 129 ntBASIC5.81□□□□□ -1.48
RNF39Q9H2S5 SNORD56.6-201ENST00000384569 71 ntBASIC5.81□□□□□ -1.48
RNF39Q9H2S5 MIR1262-201ENST00000408276 93 ntBASIC5.81□□□□□ -1.48
RNF39Q9H2S5 RNA5SP487-201ENST00000410186 122 ntBASIC5.81□□□□□ -1.48
RNF39Q9H2S5 RPL7AP6-201ENST00000477943 801 ntBASIC5.81□□□□□ -1.48
RNF39Q9H2S5 AC006349.1-201ENST00000555526 235 ntBASIC5.81□□□□□ -1.48
RNF39Q9H2S5 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC5.81□□□□□ -1.48
RNF39Q9H2S5 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC5.81□□□□□ -1.48
RNF39Q9H2S5 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC5.81□□□□□ -1.48
RNF39Q9H2S5 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
RNF39Q9H2S5 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.81□□□□□ -1.48
RNF39Q9H2S5 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.81□□□□□ -1.48
RNF39Q9H2S5 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.81□□□□□ -1.48
RNF39Q9H2S5 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
RNF39Q9H2S5 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.81□□□□□ -1.48
RNF39Q9H2S5 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.81□□□□□ -1.48
RNF39Q9H2S5 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
RNF39Q9H2S5 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC5.81□□□□□ -1.48
RNF39Q9H2S5 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
RNF39Q9H2S5 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
RNF39Q9H2S5 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.8□□□□□ -1.48
RNF39Q9H2S5 RNA5SP307-201ENST00000362863 116 ntBASIC5.8□□□□□ -1.48
RNF39Q9H2S5 RNU6-340P-201ENST00000364005 107 ntBASIC5.8□□□□□ -1.48
RNF39Q9H2S5 Y_RNA.371-201ENST00000365591 113 ntBASIC5.8□□□□□ -1.48
RNF39Q9H2S5 RNU6-132P-201ENST00000383863 107 ntBASIC5.8□□□□□ -1.48
RNF39Q9H2S5 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.8□□□□□ -1.48
RNF39Q9H2S5 RNU6-1086P-201ENST00000410930 100 ntBASIC5.8□□□□□ -1.48
RNF39Q9H2S5 RPS27P18-201ENST00000431701 247 ntBASIC5.8□□□□□ -1.48
RNF39Q9H2S5 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC5.8□□□□□ -1.48
RNF39Q9H2S5 AC245047.7-201ENST00000440265 293 ntBASIC5.8□□□□□ -1.48
RNF39Q9H2S5 RN7SL329P-201ENST00000467740 299 ntBASIC5.8□□□□□ -1.48
RNF39Q9H2S5 RN7SL188P-201ENST00000469842 285 ntBASIC5.8□□□□□ -1.48
RNF39Q9H2S5 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.8□□□□□ -1.48
RNF39Q9H2S5 MIR4700-201ENST00000578311 74 ntBASIC5.8□□□□□ -1.48
RNF39Q9H2S5 RN7SL708P-201ENST00000580952 299 ntBASIC5.8□□□□□ -1.48
RNF39Q9H2S5 AL160290.3-201ENST00000604869 165 ntBASIC5.8□□□□□ -1.48
RNF39Q9H2S5 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
RNF39Q9H2S5 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
RNF39Q9H2S5 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
RNF39Q9H2S5 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC5.8□□□□□ -1.48
RNF39Q9H2S5 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC5.8□□□□□ -1.48
RNF39Q9H2S5 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 498.5 ms