Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 KRT18P1-202ENST00000452408 1331 ntBASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PCDHGA1Q9Y5H4 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 AC020907.5-201ENST00000624372 1936 ntBASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 AP000347.1-202ENST00000435868 847 ntBASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 SEC1P-202ENST00000473944 940 ntBASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
PCDHGA1Q9Y5H4 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 AC036111.1-201ENST00000533973 1582 ntBASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 MCCD1P1-208ENST00000445732 328 ntBASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 AL160237.2-201ENST00000556165 472 ntBASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 AC091304.2-201ENST00000564639 760 ntBASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 AL136038.4-201ENST00000603606 1261 ntBASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
PCDHGA1Q9Y5H4 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 TSPY22P-201ENST00000427496 604 ntBASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 GPALPP1-207ENST00000611650 899 ntBASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PCDHGA1Q9Y5H4 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC18.17■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms