Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
DDX4Q9NQI0 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
DDX4Q9NQI0 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.18
DDX4Q9NQI0 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC22.39■■□□□ 1.18
DDX4Q9NQI0 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.18
DDX4Q9NQI0 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
DDX4Q9NQI0 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
DDX4Q9NQI0 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
DDX4Q9NQI0 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
DDX4Q9NQI0 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
DDX4Q9NQI0 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC22.39■■□□□ 1.17
DDX4Q9NQI0 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC22.39■■□□□ 1.17
DDX4Q9NQI0 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC22.39■■□□□ 1.17
DDX4Q9NQI0 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC22.39■■□□□ 1.17
DDX4Q9NQI0 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
DDX4Q9NQI0 AL512353.2-201ENST00000448759 1962 ntBASIC22.39■■□□□ 1.17
DDX4Q9NQI0 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
DDX4Q9NQI0 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
DDX4Q9NQI0 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
DDX4Q9NQI0 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC22.39■■□□□ 1.17
DDX4Q9NQI0 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
DDX4Q9NQI0 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
DDX4Q9NQI0 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC22.38■■□□□ 1.17
DDX4Q9NQI0 AC008556.1-201ENST00000610908 2040 ntBASIC22.38■■□□□ 1.17
DDX4Q9NQI0 RCC2P3-201ENST00000418112 1537 ntBASIC22.38■■□□□ 1.17
DDX4Q9NQI0 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
DDX4Q9NQI0 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC22.38■■□□□ 1.17
DDX4Q9NQI0 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC22.38■■□□□ 1.17
DDX4Q9NQI0 BID-204ENST00000399767 2129 ntTSL 2 BASIC22.38■■□□□ 1.17
DDX4Q9NQI0 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
DDX4Q9NQI0 AL645929.1-201ENST00000420084 975 ntBASIC22.38■■□□□ 1.17
DDX4Q9NQI0 AC034232.1-201ENST00000506026 1064 ntBASIC22.38■■□□□ 1.17
DDX4Q9NQI0 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC22.38■■□□□ 1.17
DDX4Q9NQI0 AL157888.1-201ENST00000631930 593 ntBASIC22.38■■□□□ 1.17
DDX4Q9NQI0 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
DDX4Q9NQI0 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
DDX4Q9NQI0 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC22.37■■□□□ 1.17
DDX4Q9NQI0 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
DDX4Q9NQI0 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
DDX4Q9NQI0 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC22.37■■□□□ 1.17
DDX4Q9NQI0 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
DDX4Q9NQI0 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
DDX4Q9NQI0 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC22.37■■□□□ 1.17
DDX4Q9NQI0 POLI-202ENST00000406285 2030 ntTSL 2 BASIC22.37■■□□□ 1.17
DDX4Q9NQI0 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
DDX4Q9NQI0 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
DDX4Q9NQI0 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
DDX4Q9NQI0 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
DDX4Q9NQI0 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC22.37■■□□□ 1.17
DDX4Q9NQI0 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC22.37■■□□□ 1.17
DDX4Q9NQI0 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC22.37■■□□□ 1.17
DDX4Q9NQI0 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC22.37■■□□□ 1.17
DDX4Q9NQI0 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC22.37■■□□□ 1.17
DDX4Q9NQI0 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC22.37■■□□□ 1.17
DDX4Q9NQI0 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
DDX4Q9NQI0 CLEC4GP1-201ENST00000596555 870 ntBASIC22.37■■□□□ 1.17
DDX4Q9NQI0 NPAP1P7-201ENST00000613027 823 ntBASIC22.37■■□□□ 1.17
DDX4Q9NQI0 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC22.37■■□□□ 1.17
DDX4Q9NQI0 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC22.37■■□□□ 1.17
DDX4Q9NQI0 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
DDX4Q9NQI0 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC22.37■■□□□ 1.17
DDX4Q9NQI0 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
DDX4Q9NQI0 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC22.36■■□□□ 1.17
DDX4Q9NQI0 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC22.36■■□□□ 1.17
DDX4Q9NQI0 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
DDX4Q9NQI0 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
DDX4Q9NQI0 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
DDX4Q9NQI0 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC22.36■■□□□ 1.17
DDX4Q9NQI0 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC22.36■■□□□ 1.17
DDX4Q9NQI0 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
DDX4Q9NQI0 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC22.36■■□□□ 1.17
DDX4Q9NQI0 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
DDX4Q9NQI0 ATP5G2P1-201ENST00000433580 426 ntBASIC22.36■■□□□ 1.17
DDX4Q9NQI0 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC22.36■■□□□ 1.17
DDX4Q9NQI0 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC22.36■■□□□ 1.17
DDX4Q9NQI0 AC112497.1-201ENST00000624824 639 ntBASIC22.36■■□□□ 1.17
DDX4Q9NQI0 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC22.36■■□□□ 1.17
DDX4Q9NQI0 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
DDX4Q9NQI0 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
DDX4Q9NQI0 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
DDX4Q9NQI0 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC22.36■■□□□ 1.17
DDX4Q9NQI0 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
DDX4Q9NQI0 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
DDX4Q9NQI0 IRX1P1-201ENST00000438849 1838 ntBASIC22.36■■□□□ 1.17
DDX4Q9NQI0 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
DDX4Q9NQI0 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
DDX4Q9NQI0 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC22.35■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms