Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC16.32■□□□□ 0.2
CHMP1AQ9HD42 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC16.32■□□□□ 0.2
CHMP1AQ9HD42 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHMP1AQ9HD42 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CHMP1AQ9HD42 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC16.32■□□□□ 0.2
CHMP1AQ9HD42 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CHMP1AQ9HD42 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CHMP1AQ9HD42 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
CHMP1AQ9HD42 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 MIR663A-201ENST00000385250 93 ntBASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 GGT1-206ENST00000404223 952 ntTSL 2 BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 OR2A1-AS1-201ENST00000462305 773 ntBASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC16.31■□□□□ 0.2
CHMP1AQ9HD42 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 AL161938.1-201ENST00000569833 2180 ntBASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 AL133373.2-201ENST00000623187 2828 ntBASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 AC005829.2-201ENST00000571422 1056 ntBASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 AC073111.5-205ENST00000641717 521 ntBASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 ZNF815P-204ENST00000434898 1737 ntBASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CHMP1AQ9HD42 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 NME6-213ENST00000451657 871 ntTSL 2 BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 AL137784.2-201ENST00000607332 1000 ntBASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CHMP1AQ9HD42 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms