Protein–RNA interactions for Protein: Q9H0I3

CCDC113, Coiled-coil domain-containing protein 113, humanhuman

Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113Q9H0I3 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC21■□□□□ 0.95
CCDC113Q9H0I3 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC113Q9H0I3 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC113Q9H0I3 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
CCDC113Q9H0I3 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC21■□□□□ 0.95
CCDC113Q9H0I3 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC113Q9H0I3 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC113Q9H0I3 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC21■□□□□ 0.95
CCDC113Q9H0I3 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CCDC113Q9H0I3 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC113Q9H0I3 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC21■□□□□ 0.95
CCDC113Q9H0I3 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CCDC113Q9H0I3 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC21■□□□□ 0.95
CCDC113Q9H0I3 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
CCDC113Q9H0I3 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
CCDC113Q9H0I3 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC113Q9H0I3 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.99■□□□□ 0.95
CCDC113Q9H0I3 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CCDC113Q9H0I3 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC113Q9H0I3 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC113Q9H0I3 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.99■□□□□ 0.95
CCDC113Q9H0I3 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC113Q9H0I3 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CCDC113Q9H0I3 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CCDC113Q9H0I3 TSPY21P-201ENST00000433481 731 ntBASIC20.99■□□□□ 0.95
CCDC113Q9H0I3 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC113Q9H0I3 DUT-205ENST00000558813 769 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC113Q9H0I3 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC113Q9H0I3 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC113Q9H0I3 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC113Q9H0I3 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC113Q9H0I3 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC113Q9H0I3 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC20.99■□□□□ 0.95
CCDC113Q9H0I3 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC113Q9H0I3 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC113Q9H0I3 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC113Q9H0I3 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CCDC113Q9H0I3 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.99■□□□□ 0.95
CCDC113Q9H0I3 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC113Q9H0I3 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC113Q9H0I3 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC20.98■□□□□ 0.95
CCDC113Q9H0I3 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC20.98■□□□□ 0.95
CCDC113Q9H0I3 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC113Q9H0I3 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC20.98■□□□□ 0.95
CCDC113Q9H0I3 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.98■□□□□ 0.95
CCDC113Q9H0I3 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC113Q9H0I3 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.98■□□□□ 0.95
CCDC113Q9H0I3 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC113Q9H0I3 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC20.98■□□□□ 0.95
CCDC113Q9H0I3 AL023803.3-201ENST00000615559 522 ntBASIC20.98■□□□□ 0.95
CCDC113Q9H0I3 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC113Q9H0I3 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
CCDC113Q9H0I3 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC20.98■□□□□ 0.95
CCDC113Q9H0I3 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
CCDC113Q9H0I3 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
CCDC113Q9H0I3 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC20.98■□□□□ 0.95
CCDC113Q9H0I3 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC20.98■□□□□ 0.95
CCDC113Q9H0I3 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.98■□□□□ 0.95
CCDC113Q9H0I3 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 AC120498.9-201ENST00000339021 3867 ntBASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 KRT18P22-201ENST00000402024 1347 ntBASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
CCDC113Q9H0I3 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.96■□□□□ 0.95
CCDC113Q9H0I3 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC113Q9H0I3 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC113Q9H0I3 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
CCDC113Q9H0I3 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.96■□□□□ 0.95
CCDC113Q9H0I3 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC113Q9H0I3 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC113Q9H0I3 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
CCDC113Q9H0I3 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.96■□□□□ 0.95
CCDC113Q9H0I3 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms