Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS13AQ96RL7 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS13AQ96RL7 BAALC-202ENST00000306391 243 ntTSL 5 BASIC18.76■□□□□ 0.59
VPS13AQ96RL7 BAALC-204ENST00000330955 222 ntTSL 5 BASIC18.76■□□□□ 0.59
VPS13AQ96RL7 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS13AQ96RL7 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS13AQ96RL7 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS13AQ96RL7 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
VPS13AQ96RL7 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS13AQ96RL7 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
VPS13AQ96RL7 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
VPS13AQ96RL7 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS13AQ96RL7 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS13AQ96RL7 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS13AQ96RL7 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
VPS13AQ96RL7 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.76■□□□□ 0.59
VPS13AQ96RL7 AC112497.1-201ENST00000624824 639 ntBASIC18.76■□□□□ 0.59
VPS13AQ96RL7 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
VPS13AQ96RL7 AC134684.3-201ENST00000641758 218 ntBASIC18.76■□□□□ 0.59
VPS13AQ96RL7 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.76■□□□□ 0.59
VPS13AQ96RL7 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
VPS13AQ96RL7 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS13AQ96RL7 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC18.75■□□□□ 0.59
VPS13AQ96RL7 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
VPS13AQ96RL7 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC18.75■□□□□ 0.59
VPS13AQ96RL7 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC18.75■□□□□ 0.59
VPS13AQ96RL7 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC18.75■□□□□ 0.59
VPS13AQ96RL7 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
VPS13AQ96RL7 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.75■□□□□ 0.59
VPS13AQ96RL7 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
VPS13AQ96RL7 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS13AQ96RL7 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
VPS13AQ96RL7 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
VPS13AQ96RL7 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS13AQ96RL7 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS13AQ96RL7 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS13AQ96RL7 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC18.75■□□□□ 0.59
VPS13AQ96RL7 AC091607.1-201ENST00000490318 1060 ntBASIC18.75■□□□□ 0.59
VPS13AQ96RL7 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.75■□□□□ 0.59
VPS13AQ96RL7 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC18.75■□□□□ 0.59
VPS13AQ96RL7 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS13AQ96RL7 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC18.75■□□□□ 0.59
VPS13AQ96RL7 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS13AQ96RL7 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
VPS13AQ96RL7 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
VPS13AQ96RL7 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS13AQ96RL7 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS13AQ96RL7 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS13AQ96RL7 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
VPS13AQ96RL7 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS13AQ96RL7 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS13AQ96RL7 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
VPS13AQ96RL7 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS13AQ96RL7 GAD2-202ENST00000376248 680 ntTSL 5 BASIC18.74■□□□□ 0.59
VPS13AQ96RL7 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC18.74■□□□□ 0.59
VPS13AQ96RL7 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.74■□□□□ 0.59
VPS13AQ96RL7 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
VPS13AQ96RL7 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS13AQ96RL7 NSUN5P1-202ENST00000421140 1535 ntBASIC18.74■□□□□ 0.59
VPS13AQ96RL7 NSUN5P2-203ENST00000457352 1529 ntBASIC18.74■□□□□ 0.59
VPS13AQ96RL7 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS13AQ96RL7 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS13AQ96RL7 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
VPS13AQ96RL7 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
VPS13AQ96RL7 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.74■□□□□ 0.59
VPS13AQ96RL7 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC18.74■□□□□ 0.59
VPS13AQ96RL7 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC18.74■□□□□ 0.59
VPS13AQ96RL7 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC18.74■□□□□ 0.59
VPS13AQ96RL7 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 GPX1P2-201ENST00000429271 606 ntBASIC18.73■□□□□ 0.59
VPS13AQ96RL7 HTR5BP-201ENST00000430851 1154 ntBASIC18.73■□□□□ 0.59
VPS13AQ96RL7 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 LINC01711-201ENST00000598340 967 ntBASIC18.73■□□□□ 0.59
VPS13AQ96RL7 BID-212ENST00000614949 1988 ntTSL 5 BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 AC006128.1-201ENST00000624704 1661 ntBASIC18.73■□□□□ 0.59
VPS13AQ96RL7 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC18.73■□□□□ 0.59
VPS13AQ96RL7 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
VPS13AQ96RL7 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
VPS13AQ96RL7 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms