Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CPNE4Q96A23 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CPNE4Q96A23 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CPNE4Q96A23 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC17.02■□□□□ 0.32
CPNE4Q96A23 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC17.02■□□□□ 0.32
CPNE4Q96A23 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
CPNE4Q96A23 AC145285.6-201ENST00000604632 637 ntBASIC17.02■□□□□ 0.32
CPNE4Q96A23 AC010947.1-201ENST00000623454 693 ntBASIC17.02■□□□□ 0.32
CPNE4Q96A23 AC026471.1-201ENST00000564629 3026 ntBASIC17.02■□□□□ 0.32
CPNE4Q96A23 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CPNE4Q96A23 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.02■□□□□ 0.31
CPNE4Q96A23 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.02■□□□□ 0.31
CPNE4Q96A23 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CPNE4Q96A23 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CPNE4Q96A23 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC17.02■□□□□ 0.31
CPNE4Q96A23 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
CPNE4Q96A23 LINC01568-207ENST00000641790 1380 ntBASIC17.02■□□□□ 0.31
CPNE4Q96A23 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE4Q96A23 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE4Q96A23 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC17.01■□□□□ 0.31
CPNE4Q96A23 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE4Q96A23 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE4Q96A23 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CPNE4Q96A23 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE4Q96A23 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC17.01■□□□□ 0.31
CPNE4Q96A23 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE4Q96A23 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CPNE4Q96A23 KRT18P22-201ENST00000402024 1347 ntBASIC17.01■□□□□ 0.31
CPNE4Q96A23 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE4Q96A23 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE4Q96A23 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
CPNE4Q96A23 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE4Q96A23 AL020996.1-203ENST00000536896 2307 ntBASIC17.01■□□□□ 0.31
CPNE4Q96A23 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE4Q96A23 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE4Q96A23 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
CPNE4Q96A23 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CPNE4Q96A23 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE4Q96A23 TSPY17P-201ENST00000450329 467 ntBASIC17.01■□□□□ 0.31
CPNE4Q96A23 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE4Q96A23 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE4Q96A23 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC17.01■□□□□ 0.31
CPNE4Q96A23 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.01■□□□□ 0.31
CPNE4Q96A23 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
CPNE4Q96A23 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.01■□□□□ 0.31
CPNE4Q96A23 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.01■□□□□ 0.31
CPNE4Q96A23 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
CPNE4Q96A23 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE4Q96A23 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.01■□□□□ 0.31
CPNE4Q96A23 AC097493.4-201ENST00000641197 219 ntBASIC17.01■□□□□ 0.31
CPNE4Q96A23 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE4Q96A23 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE4Q96A23 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.01■□□□□ 0.31
CPNE4Q96A23 FEM1AP3-201ENST00000403722 1741 ntBASIC17.01■□□□□ 0.31
CPNE4Q96A23 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC17.01■□□□□ 0.31
CPNE4Q96A23 AC005332.7-201ENST00000614046 2005 ntBASIC17.01■□□□□ 0.31
CPNE4Q96A23 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE4Q96A23 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE4Q96A23 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE4Q96A23 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE4Q96A23 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE4Q96A23 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE4Q96A23 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
CPNE4Q96A23 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE4Q96A23 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC17■□□□□ 0.31
CPNE4Q96A23 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CPNE4Q96A23 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17■□□□□ 0.31
CPNE4Q96A23 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE4Q96A23 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE4Q96A23 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE4Q96A23 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE4Q96A23 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE4Q96A23 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE4Q96A23 AC211429.1-201ENST00000415277 523 ntBASIC17■□□□□ 0.31
CPNE4Q96A23 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CPNE4Q96A23 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC17■□□□□ 0.31
CPNE4Q96A23 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC17■□□□□ 0.31
CPNE4Q96A23 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17■□□□□ 0.31
CPNE4Q96A23 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17■□□□□ 0.31
CPNE4Q96A23 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC17■□□□□ 0.31
CPNE4Q96A23 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17■□□□□ 0.31
CPNE4Q96A23 LETM1P2-201ENST00000597330 2178 ntBASIC17■□□□□ 0.31
CPNE4Q96A23 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE4Q96A23 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17■□□□□ 0.31
CPNE4Q96A23 FP475955.4-201ENST00000623131 1990 ntBASIC17■□□□□ 0.31
CPNE4Q96A23 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC17■□□□□ 0.31
CPNE4Q96A23 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17■□□□□ 0.31
CPNE4Q96A23 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE4Q96A23 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE4Q96A23 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
CPNE4Q96A23 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
CPNE4Q96A23 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17■□□□□ 0.31
CPNE4Q96A23 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CPNE4Q96A23 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC16.99■□□□□ 0.31
CPNE4Q96A23 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CPNE4Q96A23 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC16.99■□□□□ 0.31
CPNE4Q96A23 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC16.99■□□□□ 0.31
CPNE4Q96A23 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CPNE4Q96A23 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CPNE4Q96A23 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms